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[187330_at]

Description Y110A7A.11 /REP_DB=WormBase Gene ID /WP=CE24119 /TR=Q9N598 /GB=AAF60428.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 76      4grp_high_8_8 > 56      6grp_highest_nonorm > 81      6grp_total > 66      4grp_total > 60      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 278.1
(-3)
A 		321.3
(3)
A 		306.4
(0.9)
A 		305.1
(0.8)
P 		43
B 334.9
(2.6)
P 		222.3
(-3)
P 		342.2
(3)
P 		261.6
(-1)
P 		120
C 296
(1.5)
M 		280.3
(1)
P 		338.5
(3)
P 		165.9
(-3)
A 		173
avr 303
(1.2) 		274.6
(-0.8) 		329
(3) 		244.2
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 169.8
(-2.2)
P 		310.6
(2.8)
P 		206
(-0.9)
P 		259.4
(1)
P 		147.6
(-3)
P 		316.8
(3)
P 		169
B 293.5
(0.2)
P 		269.3
(-0.7)
P 		271
(-0.7)
P 		281.1
(-0.3)
P 		211.5
(-3)
P 		365.2
(3)
P 		154
C 287.6
(-2.2)
P 		261.9
(-2.9)
P 		265.5
(-2.8)
P 		256.6
(-3)
P 		287.9
(-2.2)
P 		490.6
(3)
P 		234
avr 250.3
(-1.8) 		280.6
(-0.8) 		247.5
(-1.9) 		265.7
(-1.3) 		215.7
(-3) 		390.9
(3) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 101.2
(3)
A 		69.7
(-0.3)
A 		80.1
(0.8)
A 		44.7
(-3)
P 		57
B 106.8
(3)
P 		54.9
(-3)
P 		79.3
(-0.2)
P 		55.8
(-2.9)
P 		52
C 98
(1.7)
M 		80.6
(0.5)
P 		118
(3)
P 		28
(-3)
A 		90
avr 102
(3) 		68.4
(-0.4) 		92.5
(2) 		42.8
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 31.3
(-3)
P 		110.5
(3)
P 		44.9
(-2)
P 		65.8
(-0.4)
P 		44.5
(-2)
P 		77.1
(0.5)
P 		79
B 102.1
(0.1)
P 		89.6
(-1)
P 		65.8
(-3)
P 		74.5
(-2.3)
P 		85.9
(-1.3)
P 		136.2
(3)
P 		70
C 106.6
(-0.1)
P 		79.9
(-1.5)
P 		67.6
(-2.1)
P 		51.6
(-3)
P 		93.2
(-0.8)
P 		164.2
(3)
P 		113
avr 80
(-1.1) 		93.3
(0.1) 		59.4
(-3) 		64
(-2.6) 		74.5
(-1.6) 		125.8
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187330_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1333
Sequence Type Exemplar sequence
Representative Public ID Y110A7A.11 NCBI
Target Description Y110A7A.11 /REP_DB=WormBase Gene ID /WP=CE24119 /TR=Q9N598 /GB=AAF60428.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059120 NCBI Caenorhabditis elegans Y110A7A.11 (Y110A7A.11) mRNA, complete cds. 11/11 None
GENEFINDER00000029232 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5106185:5109950:1 10/11 None
SNAP00000029204 ENSEMBL cdna:SNAP chromosome:CEL140:I:5106296:5107561:1 11/11 None
Y110A7A.11 ENSEMBL cdna:known chromosome:CEL140:I:5106296:5107623:1 gene:Y110A7A.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5106295-5107561(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A7A.11
Entrez Gene 172140 Entrez gene
SwissProt Q9N598 EMBL-EBI
WormBase CE34394 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60427 Phosphoinositide kinase adapter subunit protein 1 [Caenorhabditis elegans] ref|NP_491522.1| phosphoinositide kinase AdAPter subunit family member (aap-1) [Caenorhabditis elegans] gb|AAF28335.1| phosphoinositide 3-kinase adapter subunit [Caenorhabditis elegans] 0.0
blast CAE65732 Hypothetical protein CBG10815 [Caenorhabditis briggsae] 0.0
blast AAF60428 Hypothetical protein Y110A7A.11 [Caenorhabditis elegans] ref|NP_491521.2| Y110A7A.11 [Caenorhabditis elegans] sp|Q9N598|USE1_CAEEL USE1-like protein 1.0E-114
blast AAF60428 Hypothetical protein Y110A7A.11 [Caenorhabditis elegans] ref|NP_491521.2| Y110A7A.11 [Caenorhabditis elegans] sp|Q9N598|USE1_CAEEL USE1-like protein 1.0E-110
blast AAF60428 Hypothetical protein Y110A7A.11 [Caenorhabditis elegans] ref|NP_491521.2| Y110A7A.11 [Caenorhabditis elegans] sp|Q9N598|USE1_CAEEL USE1-like protein 1.0E-100
blast CAE65731 Hypothetical protein CBG10814 [Caenorhabditis briggsae] 1.0E-66
blast CAE65731 Hypothetical protein CBG10814 [Caenorhabditis briggsae] 1.0E-62
blast AAR96209 AT10903p [Drosophila melanogaster] 4.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR000980 EMBL-EBI SH2 motif 1.8E-17
Pfam IPR000980 EMBL-EBI SH2 motif 1.3E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491521.2 1 227-249
Y110A7A.11 1 227-249
GENEFINDER00000029232 2 4-26,217-234
SNAP00000029204 1 224-246
Sequence
Target Sequence 
>C. ELEGANS:187330_AT
atattctccacgagtaccgacaggaagtcttgcaactgaaattactcgctgaagctgaaa
gcaagtcgtcagccgaggagcgcctgaaagtgattgaaaaaattccacgtgtatttcccg
atgtccaagtaactgttgcagactccaagaatgataacgaggcggaaagttacgattttg
aaaaagaatccgcagctggactccgagctactcaacgatccatctatcgatcagatcttc
ggaagcagttgctttcatctaataaacatagagcacaagacacatctgaagatcaggaat
tcatgaaaaatgagcttgtcgaggaggagctagcaaatagtttggccactatggcgagat
cattcaaaacgatgatgtcggctgctggagatgtgattaaagaagatacagaaagagcaa
tattaatggcgaaagaagtcgatgataataaaacagctctcgggattcaaagtgagcgag
ttgagcgtcacgcctacaaatgtggttatgactgtttcaaggtcatgctcattgttctga
tttttatgagcttcgtatcaatggttcttatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCTCCACGAGTACCGACAGGA 369 19 167 Antisense
GTCTTGCAACTGAAATTACTCGCTG 273 469 193 Antisense
AAGCAAGTCGTCAGCCGAGGAGCGC 118 151 225 Antisense
GTGTATTTCCCGATGTCCAAGTAAC 582 483 275 Antisense
AAAAGAATCCGCAGCTGGACTCCGA 250 131 348 Antisense
GAGCTACTCAACGATCCATCTATCG 218 389 371 Antisense
GATGATGTCGGCTGCTGGAGATGTG 511 411 537 Antisense
AAAACAGCTCTCGGGATTCAAAGTG 140 131 616 Antisense
TGAGCGAGTTGAGCGTCACGCCTAC 631 569 639 Antisense
AAGGTCATGCTCATTGTTCTGATTT 46 161 685 Antisense
GAGCTTCGTATCAATGGTTCTTATG 267 387 714 Antisense
Sequence Source Affymetrix Proprietary Database