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[187329_at]

Description T19C3.2 /REP_DB=WormBase Gene ID /WP=CE02053 /TR=SW:Q10008 /GB=AAC46593.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 52      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 62      6grp_total > 62      4grp_total > 49      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 717
1 2 3 4 range
A 72
(-3)
P 		648.1
(2.8)
P 		667.1
(3)
P 		141.6
(-2.3)
P 		595
B 80
(-3)
P 		780.4
(3)
P 		621.5
(1.6)
P 		78.6
(-3)
P 		702
C 63.8
(-3)
P 		763.9
(3)
P 		631.5
(1.9)
P 		108.6
(-2.6)
P 		700
avr 71.9
(-3) 		730.8
(3) 		640
(2.2) 		109.6
(-2.7) 		659

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 778
1 2 3 4 5 6 range
A 156.8
(-3)
P 		483
(-0.4)
P 		897.2
(3)
P 		610.6
(0.7)
P 		517.2
(-0.1)
P 		182.6
(-2.8)
P 		740
B 143.7
(-3)
P 		719.7
(3)
P 		504.8
(0.8)
P 		610.6
(1.9)
P 		388.1
(-0.5)
P 		307
(-1.3)
P 		576
C 118.9
(-3)
P 		688.7
(3)
P 		509.8
(1.1)
P 		540.1
(1.4)
P 		315.7
(-0.9)
P 		284
(-1.3)
P 		570
avr 139.8
(-3) 		630.5
(2.9) 		637.3
(3) 		587.1
(2.4) 		407
(0.2) 		257.9
(-1.6) 		498
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 26.2
(-2.8)
P 		140.7
(1.7)
P 		174.4
(3)
P 		20.7
(-3)
P 		154
B 25.5
(-2.7)
P 		192.8
(3)
P 		144
(1.3)
P 		16.8
(-3)
P 		176
C 21.1
(-2.9)
P 		219.6
(3)
P 		220.1
(3)
P 		18.3
(-3)
P 		202
avr 24.3
(-2.8) 		184.4
(3) 		179.5
(2.8) 		18.6
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 211
1 2 3 4 5 6 range
A 28.9
(-3)
P 		171.8
(2.1)
P 		195.4
(3)
P 		154.9
(1.5)
P 		156.1
(1.6)
P 		44.5
(-2.4)
P 		167
B 50
(-3)
P 		239.6
(3)
P 		122.6
(-0.7)
P 		161.7
(0.5)
P 		157.7
(0.4)
P 		114.5
(-1)
P 		190
C 44.1
(-3)
P 		210.1
(3)
P 		129.8
(0.1)
P 		108.6
(-0.7)
P 		102.2
(-0.9)
P 		95.1
(-1.2)
P 		166
avr 41
(-3) 		207.2
(3) 		149.3
(0.9) 		141.7
(0.6) 		138.7
(0.5) 		84.7
(-1.4) 		166
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187329_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8189
Sequence Type Exemplar sequence
Representative Public ID T19C3.2 NCBI
Target Description T19C3.2 /REP_DB=WormBase Gene ID /WP=CE02053 /TR=SW:Q10008 /GB=AAC46593.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064819(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064819 NCBI Caenorhabditis elegans T19C3.2 (T19C3.2) mRNA, complete cds. 11/11 None
T19C3.2 ENSEMBL cdna:known chromosome:CEL140:III:614704:617404:-1 gene:T19C3.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033748 7/11 Cross Hyb Matching Probes None
GENEFINDER00000033758 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:614703-617404(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T19C3.2
Entrez Gene 175215 Entrez gene
SwissProt Q10008 EMBL-EBI
WormBase CE02053 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46593 Hypothetical protein T19C3.2 [Caenorhabditis elegans] ref|NP_497220.1| T19C3.2 [Caenorhabditis elegans] sp|Q10008|YSV2_CAEEL Hypothetical protein T19C3.2 in chromosome III 1.0E-166
blast CAE69224 Hypothetical protein CBG15264 [Caenorhabditis briggsae] 1.0E-118
blast AAK29935 Hypothetical protein Y54F10AM.6 [Caenorhabditis elegans] ref|NP_497571.1| Y54F10AM.6 [Caenorhabditis elegans] 8.0E-28
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497220.1 1 5-27
T19C3.2 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:187329_AT
gttgctccctggccgaaaaggatgccgcaaccacgtctttttccgtctactcaaggatcg
ttggggagtggctttcaacaatttctacacttatctgagagatactacaactagtgaaga
gcagtgtggagagtgctcttatcaacagagttgtggtagaaaatgtcatagaagaggcga
catcggaatcatcaatccattattcgtcgctgagagaaaatgtatgggagttgatcagag
caaagcatgtgtgtcaacattcaaacaggactgcaaattatggccaaatccagaaatcaa
actcccaaatgttactgaatctatgcaacagattattgataatttggactatttacagtg
tgttccagagcatcgcccatctggatcggtgtgccgctgctgctgtcacccatacacacc
aaatccacaaaccttcgagtacttgtaccgtaaagcctaccgtaaagccgagacgcctct
aacctcaattttcaggagcccctttttaggctccgcccattttggtggcgcccttcttcg
tctttcctcccatttcattcattccatgtttttagctgtttcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTCCCTGGCCGAAAAGGATGC 345 439 198 Antisense
CGAAAAGGATGCCGCAACCACGTCT 259 253 211 Antisense
GTCTTTTTCCGTCTACTCAAGGATC 161 447 232 Antisense
GGGAGTGGCTTTCAACAATTTCTAC 417 495 261 Antisense
ATCATCAATCCATTATTCGTCGCTG 185 31 385 Antisense
TTACAGTGTGTTCCAGAGCATCGCC 61 683 550 Antisense
ACACCAAATCCACAAACCTTCGAGT 584 109 613 Antisense
TAAAGCCTACCGTAAAGCCGAGACG 445 637 648 Antisense
ACGCCTCTAACCTCAATTTTCAGGA 24 91 670 Antisense
TCAGGAGCCCCTTTTTAGGCTCCGC 679 621 689 Antisense
ATTCCATGTTTTTAGCTGTTTCCTG 653 7 758 Antisense
Sequence Source Affymetrix Proprietary Database