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[187327_at]

Description C13B9.2 /REP_DB=WormBase Gene ID /WP=CE01777 /TR=SW:Q09235 /GB=AAA62515.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 4.8
(-2.9)
A 		70
(3)
A 		3.2
(-3)
A 		11.1
(-2.3)
A 		67
B 27.7
(-0.4)
A 		12.3
(-2.5)
A 		8.4
(-3)
A 		53
(3)
A 		45
C 13.2
(3)
A 		7.8
(-3)
A 		9.6
(-1)
A 		12.8
(2.6)
A 		5
avr 15.2
(-0.9) 		30
(3) 		7.1
(-3) 		25.6
(1.8) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 7.7
(-3)
A 		33.7
(0.3)
A 		9.5
(-2.8)
A 		21.8
(-1.2)
A 		55
(3)
A 		36.5
(0.7)
A 		47
B 3.3
(-3)
A 		58.7
(3)
A 		23.4
(-0.8)
A 		43.8
(1.4)
A 		48.6
(1.9)
A 		36.4
(0.6)
A 		55
C 23.2
(-1.1)
A 		51.4
(3)
A 		9.7
(-3)
A 		31.5
(0.1)
A 		13.8
(-2.4)
A 		11.1
(-2.8)
A 		42
avr 11.4
(-3) 		47.9
(3) 		14.2
(-2.5) 		32.4
(0.5) 		39.1
(1.6) 		28
(-0.3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.8
(-2.6)
A 		15.2
(3)
A 		0.8
(-3)
A 		1.6
(-2.7)
A 		14
B 8.8
(1.4)
A 		3
(-2.3)
A 		1.9
(-3)
A 		11.3
(3)
A 		9
C 4.4
(3)
A 		2.3
(-2.7)
A 		3.3
(-0)
A 		2.2
(-3)
A 		2
avr 5
(0.8) 		6.8
(3) 		2
(-3) 		5
(0.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.4
(-3)
A 		12
(1.2)
A 		2.1
(-2.7)
A 		5.5
(-1.4)
A 		16.6
(3)
A 		8.9
(-0)
A 		15
B 1.2
(-3)
A 		19.5
(2.9)
A 		5.7
(-1.5)
A 		11.6
(0.4)
A 		19.8
(3)
A 		13.6
(1)
A 		19
C 8.6
(-0.2)
A 		15.7
(3)
A 		2.5
(-3)
A 		6.3
(-1.3)
A 		4.5
(-2.1)
A 		3.7
(-2.5)
A 		13
avr 3.7
(-2.9) 		15.7
(3) 		3.4
(-3) 		7.8
(-0.9) 		13.6
(2) 		8.7
(-0.4) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187327_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6006
Sequence Type Exemplar sequence
Representative Public ID C13B9.2 NCBI
Target Description C13B9.2 /REP_DB=WormBase Gene ID /WP=CE01777 /TR=SW:Q09235 /GB=AAA62515.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066061(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066061 NCBI Caenorhabditis elegans C13B9.2 (C13B9.2) mRNA, complete cds. 11/11 None
SNAP00000006900 ENSEMBL cdna:SNAP chromosome:CEL140:III:6620202:6622129:1 11/11 None
GENEFINDER00000006910 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6620202:6622129:1 11/11 None
C13B9.2 ENSEMBL cdna:known chromosome:CEL140:III:6620842:6622129:1 gene:C13B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6619413-6622128(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13B9.2
Entrez Gene 266887 Entrez gene
SwissProt Q09235 EMBL-EBI
WormBase CE30489 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583809_AT similar to CG9886-like cfa
CANINE_2:CFA.8296.1.A1_AT similar to CG9886-like cfa
CANINE_2:CFAAFFX.15341.1.S1_S_AT similar to CG9886-like cfa
CANINE_2:CFAAFFX.15343.1.S1_S_AT similar to CG9886-like cfa
DROSOPHILA_2:1636932_AT dm
DROSGENOME1:141414_AT dm
CHICKEN:GGA.7342.1.S1_AT similar to CG9886-like; glycerate kinase gga
CHICKEN:GGAAFFX.2492.2.S1_S_AT similar to CG9886-like; glycerate kinase gga
CHICKEN:GGAAFFX.2492.4.S1_S_AT similar to CG9886-like; glycerate kinase gga
HU35KSUBA:W20276_F_AT CG9886-like hs
HU35KSUBA:HUM_ALU_AT CG9886-like hs
HU35KSUBB:HUM_ALU_AT CG9886-like hs
HU35KSUBC:HUM_ALU_AT CG9886-like hs
HU35KSUBD:HUM_ALU_AT CG9886-like hs
HUGENEFL:HUM_ALU_AT CG9886-like hs
HC-G110:HUM_ALU_AT CG9886-like hs
HU35KSUBB:RC_R73485_AT CG9886-like hs
HU35KSUBD:RC_N93246_F_AT CG9886-like hs
U133_X3P:HS.109414.1.A1_3P_X_AT CG9886-like hs
U133_X3P:HS.109414.1.A1_3P_AT CG9886-like hs
U133_X3P:HS.109414.0.A1_3P_X_AT CG9886-like hs
U133_X3P:HS.109414.0.A1_3P_AT CG9886-like hs
U133_X3P:HS.109414.0.A1_3P_A_AT CG9886-like hs
U133_X3P:238518_3P_X_AT CG9886-like hs
HG-U133_PLUS_2:238518_X_AT CG9886-like hs
HG-U133B:238518_X_AT CG9886-like hs
HG-U133_PLUS_2:242341_X_AT CG9886-like hs
HG-U133B:242341_X_AT CG9886-like hs
HG-U95C:54957_AT CG9886-like hs
HG-U95E:76072_AT CG9886-like hs
MOUSE430A_2:1424995_AT RIKEN cDNA 6230410P16 gene mm
MOE430A:1424995_AT RIKEN cDNA 6230410P16 gene mm
MOUSE430_2:1424995_AT RIKEN cDNA 6230410P16 gene mm
MG-U74CV2:133793_AT RIKEN cDNA 6230410P16 gene mm
MOE430A:1424994_AT RIKEN cDNA 6230410P16 gene mm
MOUSE430A_2:1424994_AT RIKEN cDNA 6230410P16 gene mm
MOUSE430_2:1424994_AT RIKEN cDNA 6230410P16 gene mm
MOE430B:1458890_AT RIKEN cDNA 6230410P16 gene mm
MOUSE430_2:1458890_AT RIKEN cDNA 6230410P16 gene mm
Protein Similarities
Method ID Description E-Value
blast AAN73881 Hypothetical protein C13B9.2 [Caenorhabditis elegans] ref|NP_498462.2| C13B9.2 [Caenorhabditis elegans] sp|Q09235|YQ42_CAEEL Hypothetical protein C13B9.2 in chromosome III 0.0
blast B88487 protein C13B9.2 [imported] - Caenorhabditis elegans 1.0E-145
blast CAE69162 Hypothetical protein CBG15194 [Caenorhabditis briggsae] 1.0E-136
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 2.29999995231628
Pfam IPR007835 EMBL-EBI MOFRL 1.2E-67
Pfam IPR007835 EMBL-EBI MOFRL 1.2E-67
Sequence
Target Sequence 
>C. ELEGANS:187327_AT
atacttcacgtttccaaaacttcataatttcaagcaacaactttgctcttcgagcggctg
ctgaatatttaacttcttctggttataattcaacaattgtgacgtcatcattgtctggaa
atgctgctgaaatcggaaaaaagtttgctgaaattattactgaaaaatcaataacttcga
gtcatcttttaaaaaactcgaatttaactatcgaaaattatccaattgctctactttttg
gtggtgagacaactgttcatttgtctgaaaatccaggaaaaggaggtcgcaatcaggaaa
tggtactgagctgtctggatgctttgaagacgcgagttccagctcataatttcacttttt
tgagtgctggaactgatggacaagatggacctacggatgctgccggagcaatcataagca
atgaagatttgcctttaaattctcttctcaacagttcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATACTTCACGTTTCCAAAACTTCAT 25 21 518 Antisense
GCAACAACTTTGCTCTTCGAGCGGC 268 319 551 Antisense
GCTCTTCGAGCGGCTGCTGAATATT 375 301 562 Antisense
AAATTATCCAATTGCTCTACTTTTT 689 115 732 Antisense
GGTACTGAGCTGTCTGGATGCTTTG 231 505 819 Antisense
GATGCTTTGAAGACGCGAGTTCCAG 106 413 835 Antisense
GTTCCAGCTCATAATTTCACTTTTT 447 441 853 Antisense
CAAGATGGACCTACGGATGCTGCCG 121 185 898 Antisense
GGATGCTGCCGGAGCAATCATAAGC 636 513 912 Antisense
GATTTGCCTTTAAATTCTCTTCTCA 21 429 943 Antisense
TAAATTCTCTTCTCAACAGTTCGGA 363 639 953 Antisense
Sequence Source Affymetrix Proprietary Database