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[187326_at]

Description C03B1.6 /REP_DB=WormBase Gene ID /WP=CE27578 /TR=SW:Q11113 /GB=AAA81739.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 14      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 122.4
(0.1)
P 		81
(-1.7)
P 		53.6
(-3)
A 		185.1
(3)
P 		132
B 135.1
(3)
P 		65
(-1.8)
A 		65.9
(-1.7)
A 		47.5
(-3)
P 		88
C 117
(-0.9)
P 		70.6
(-2.5)
P 		57.4
(-3)
A 		228.8
(3)
P 		171
avr 124.8
(1.2) 		72.2
(-2.2) 		59
(-3) 		153.8
(3) 		95

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 121.9
(3)
A 		61.1
(-0.4)
P 		86.3
(1)
P 		24.2
(-2.4)
A 		39.5
(-1.6)
A 		13.7
(-3)
A 		108
B 83.4
(1.5)
P 		101.2
(3)
P 		89.8
(2)
P 		37.8
(-2.3)
A 		69.4
(0.3)
P 		29.8
(-3)
A 		71
C 99.9
(1.4)
P 		133.5
(3)
P 		7.6
(-3)
A 		78.9
(0.4)
A 		37.3
(-1.6)
A 		36.4
(-1.6)
A 		126
avr 101.7
(3) 		98.6
(2.8) 		61.2
(-0.2) 		47
(-1.4) 		48.7
(-1.2) 		26.6
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 44.6
(3)
P 		17.6
(-2.3)
P 		14
(-3)
A 		27.1
(-0.4)
P 		31
B 43.1
(3)
P 		16
(-1.9)
A 		15.3
(-2.1)
A 		10.1
(-3)
P 		33
C 38.7
(3)
P 		20.3
(-2.9)
P 		20
(-3)
A 		38.6
(3)
P 		19
avr 42.1
(3) 		18
(-2.6) 		16.4
(-3) 		25.3
(-0.9) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 22.5
(3)
A 		21.7
(2.8)
P 		18.8
(1.8)
P 		6.1
(-2.1)
A 		11.9
(-0.3)
A 		3.3
(-3)
A 		19
B 29
(1.8)
P 		33.7
(3)
P 		21.8
(-0)
P 		10
(-3)
A 		28.2
(1.6)
P 		11.1
(-2.7)
A 		24
C 37
(2.4)
P 		40.7
(3)
P 		1.9
(-3)
A 		15.9
(-0.8)
A 		12.1
(-1.4)
A 		12.2
(-1.4)
A 		39
avr 29.5
(2.4) 		32
(3) 		14.2
(-1.6) 		10.7
(-2.5) 		17.4
(-0.8) 		8.9
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16862
Sequence Type Exemplar sequence
Representative Public ID C03B1.6 NCBI
Target Description C03B1.6 /REP_DB=WormBase Gene ID /WP=CE27578 /TR=SW:Q11113 /GB=AAA81739.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182466(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182466 NCBI Caenorhabditis elegans C03B1.15 (C03B1.15) mRNA, complete cds. 9/11 None
GENEFINDER00000009793 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6349704:6351832:1 11/11 None
C03B1.15 ENSEMBL cdna:known chromosome:CEL140:X:6351283:6351832:1 gene:C03B1.15 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076663 2/11 Cross Hyb Matching Probes None
SNAP00000009782 5/11 Cross Hyb Matching Probes None
C03B1.6 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6350142-6351832(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B1.15
Entrez Gene 353494 Entrez gene
SwissProt Q8IG57 EMBL-EBI
WormBase CE31873 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T15382 hypothetical protein C03B1.6 - Caenorhabditis elegans 1.0E-108
blast AAN39680 Hypothetical protein C03B1.15 [Caenorhabditis elegans] ref|NP_872266.1| C03B1.15 [Caenorhabditis elegans] sp|Q8IG57|YX0F_CAEEL Hypothetical protein C03B1.15 in chromosome X 2.0E-77
blast T15382 hypothetical protein C03B1.6 - Caenorhabditis elegans 2.0E-77
blast AAN39680 Hypothetical protein C03B1.15 [Caenorhabditis elegans] ref|NP_872266.1| C03B1.15 [Caenorhabditis elegans] sp|Q8IG57|YX0F_CAEEL Hypothetical protein C03B1.15 in chromosome X 1.0E-76
blast CAE61245 Hypothetical protein CBG05046 [Caenorhabditis briggsae] 1.0E-54
blast CAE61245 Hypothetical protein CBG05046 [Caenorhabditis briggsae] 9.0E-26
Sequence
Target Sequence 
>C. ELEGANS:187326_AT
aatttccagtcatctactcatgcttatttcaggcactccaaggtgactattttggaaatt
tgacaactgcactcaagaaaatttacaaaaatggcaagcgtaatttcaaaaaggagaaaa
aactcgagaagaaccaacaagtcaacaaaatgcaaaatataaccaacgctcacaactata
tcaaacaccttctatcacaatccggctatttgcgatatcataatcgccatttgaaagggg
ataattacaaatatgtgatcagacgttttaacgctgctttgaaaaactataataaagaat
tgtatttggttttcgaaaaaaccgatcacatccactttctccacgaaatgttgttcatca
agaacctgcgaaactatccatttcctacaaactgggtatctcttgttgcattacacgaca
actctccaaaattcgaacgtattctggcagctattcgggttgtaacggaatacgatggag
atgctgctccagagtttgaaccgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCCAGTCATCTACTCATGCTT 343 175 326 Antisense
ACTCATGCTTATTTCAGGCACTCCA 301 99 341 Antisense
TAACCAACGCTCACAACTATATCAA 104 639 485 Antisense
CAAACACCTTCTATCACAATCCGGC 477 191 507 Antisense
ACAATCCGGCTATTTGCGATATCAT 459 113 522 Antisense
CACATCCACTTTCTCCACGAAATGT 564 195 652 Antisense
GAACCTGCGAAACTATCCATTTCCT 440 345 687 Antisense
CTGGGTATCTCTTGTTGCATTACAC 218 239 717 Antisense
TGCATTACACGACAACTCTCCAAAA 192 579 732 Antisense
GTATTCTGGCAGCTATTCGGGTTGT 418 453 764 Antisense
GATGCTGCTCCAGAGTTTGAACCGG 422 413 805 Antisense
Sequence Source Affymetrix Proprietary Database