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[187325_at]

Description B0228.8 /REP_DB=WormBase Gene ID /WP=CE01748 /TR=SW:Q09224 /GB=AAC38811.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 26.6
(-0.9)
A 		8.4
(-2.6)
A 		3.9
(-3)
A 		69.2
(3)
A 		65
B 6.5
(-3)
A 		6.4
(-3)
A 		30.3
(3)
A 		26.4
(2)
A 		24
C 43.1
(-0.2)
A 		5
(-3)
A 		10
(-2.6)
A 		85.3
(3)
A 		80
avr 25.4
(-0.9) 		6.6
(-3) 		14.7
(-2.1) 		60.3
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 12.1
(-1.6)
A 		20.5
(-0.1)
A 		18.1
(-0.5)
A 		3.9
(-3)
A 		38.3
(3)
A 		34.7
(2.4)
A 		34
B 3.2
(-2.6)
A 		19.3
(1.5)
A 		6.8
(-1.6)
A 		1.5
(-3)
A 		25
(3)
A 		13.7
(0.1)
A 		24
C 7.2
(-2.4)
A 		42.1
(3)
A 		17.4
(-0.8)
A 		3.5
(-3)
A 		9.8
(-2)
A 		3.3
(-3)
A 		39
avr 7.5
(-1.9) 		27.3
(3) 		14.1
(-0.3) 		3
(-3) 		24.4
(2.3) 		17.2
(0.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.7
(2.7)
A 		1.8
(-2.5)
A 		1
(-3)
A 		10.1
(3)
A 		9
B 2.1
(-2.4)
A 		1.6
(-3)
A 		7
(3)
A 		5.6
(1.4)
A 		5
C 14.3
(3)
A 		1.4
(-3)
A 		3.5
(-2)
A 		14.4
(3)
A 		13
avr 8.7
(2.1) 		1.6
(-3) 		3.8
(-1.4) 		10
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.2
(-2.3)
A 		7.3
(0.6)
A 		3.9
(-1.4)
A 		1
(-3)
A 		11.6
(3)
A 		8.4
(1.2)
A 		11
B 1.1
(-2.6)
A 		6.4
(0.7)
A 		1.7
(-2.2)
A 		0.4
(-3)
A 		10.1
(3)
A 		5.1
(-0.1)
A 		10
C 2.7
(-2)
A 		12.9
(3)
A 		4.4
(-1.2)
A 		0.7
(-3)
A 		3.2
(-1.8)
A 		1.1
(-2.8)
A 		12
avr 2
(-2) 		8.9
(3) 		3.3
(-1.1) 		0.7
(-3) 		8.3
(2.6) 		4.9
(0.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5889
Sequence Type Exemplar sequence
Representative Public ID B0228.8 NCBI
Target Description B0228.8 /REP_DB=WormBase Gene ID /WP=CE01748 /TR=SW:Q09224 /GB=AAC38811.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063229 NCBI Caenorhabditis elegans B0228.8 (B0228.8) mRNA, complete cds. 11/11 None
B0228.8 ENSEMBL cdna:known chromosome:CEL140:II:7760774:7761461:-1 gene:B0228.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7760770-7761458(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0228.8
Entrez Gene 181864 Entrez gene
SwissProt Q09224 EMBL-EBI
WormBase CE01748 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC38811 Hypothetical protein B0228.8 [Caenorhabditis elegans] ref|NP_495630.1| B0228.8 [Caenorhabditis elegans] sp|Q09224|YP78_CAEEL Hypothetical protein B0228.8 in chromosome II 1.0E-120
blast CAE67465 Hypothetical protein CBG12966 [Caenorhabditis briggsae] 2.0E-56
Sequence
Target Sequence 
>C. ELEGANS:187325_AT
ttactctatttgtctttttcttatcaataagtattgcatatgcggattttgatttcgaag
actacaactttgcaacattcaatgaaatttatgataatgagattcctgacgatattcctt
catctcgtcactttttgaaatcttcaagaggtactgtaggtctcccaaaaactgctacag
aaatgatgacgcgattcaatgaaaaccttctgaacttcctgaaatcaaaatctgaaaacg
attggaaactaattatggaattaatgtcaccggatgcatttattgaaacctgcatggaat
ctgcatatggattgagtatggaccagtttcataaatggataacattcttgagcaattatt
atgcagaagttggtctcacaagtacaaaaataaaggacaattcggaaactggtgtcacaa
ctgaattagtatattatactgttttgagaaatggcgaaaaaggttcagataaatgggcaa
tgtctgcaacattgaacaagaaaaaaggacatttttgtataaatactctgcatatgctct
cagaatgcaaaaatattcccaaaaaaccatcactcgagcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACTCTATTTGTCTTTTTCTTATC 347 683 23 Antisense
GCGGATTTTGATTTCGAAGACTACA 406 293 64 Antisense
GATTCCTGACGATATTCCTTCATCT 420 433 123 Antisense
TTCCTTCATCTCGTCACTTTTTGAA 331 699 137 Antisense
CAAGAGGTACTGTAGGTCTCCCAAA 626 183 167 Antisense
TAGGTCTCCCAAAAACTGCTACAGA 12 647 179 Antisense
GAAAACCTTCTGAACTTCCTGAAAT 479 353 223 Antisense
TATGGAATTAATGTCACCGGATGCA 3 655 276 Antisense
TGCAGAAGTTGGTCTCACAAGTACA 706 577 384 Antisense
GTATAAATACTCTGCATATGCTCTC 193 453 539 Antisense
CCCAAAAAACCATCACTCGAGCCTG 594 255 580 Antisense
Sequence Source Affymetrix Proprietary Database