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[187324_at]

Description C03B1.9 /REP_DB=WormBase Gene ID /WP=CE03910 /TR=SW:Q11115 /GB=AAA81738.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 6.6
(-3)
A 		13
(-2.6)
A 		27.3
(-1.8)
A 		108.8
(3)
M 		102
B 8.1
(-3)
A 		46.1
(3)
A 		14.9
(-1.9)
A 		20.1
(-1.1)
A 		38
C 10.8
(-2.2)
A 		37.6
(1.4)
A 		4.6
(-3)
A 		50
(3)
A 		45
avr 8.5
(-3) 		32.2
(-0.2) 		15.6
(-2.2) 		59.6
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 24.3
(-0.1)
A 		30.3
(0.8)
A 		32
(1)
A 		2.6
(-3)
A 		46.9
(3)
A 		6.1
(-2.5)
A 		44
B 4.6
(-3)
A 		11.4
(-1.2)
A 		8
(-2.1)
A 		24
(2)
A 		16.4
(0.1)
A 		27.7
(3)
A 		23
C 2.2
(-2.9)
A 		23.3
(3)
A 		16.6
(1.1)
A 		2.8
(-2.8)
A 		2
(-3)
A 		17
(1.2)
A 		21
avr 10.4
(-2.7) 		21.7
(3) 		18.9
(1.6) 		9.8
(-3) 		21.8
(3) 		16.9
(0.5) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.4
(-3)
A 		2.8
(-2.8)
A 		7.1
(-0.9)
A 		15.9
(3)
M 		14
B 2.6
(-3)
A 		11.4
(3)
A 		3.4
(-2.5)
A 		4.3
(-1.8)
A 		9
C 3.6
(-1.7)
A 		10.8
(3)
A 		1.6
(-3)
A 		8.4
(1.4)
A 		9
avr 2.9
(-3) 		8.3
(1.9) 		4
(-2) 		9.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.5
(-1.3)
A 		10.8
(1.5)
A 		7
(-0.2)
A 		0.7
(-3)
A 		14.2
(3)
A 		1.5
(-2.6)
A 		14
B 1.6
(-3)
A 		3.8
(-1.5)
A 		1.9
(-2.8)
A 		6.4
(0.3)
A 		6.6
(0.4)
A 		10.3
(3)
A 		9
C 0.8
(-2.8)
A 		7.1
(3)
A 		4.2
(0.3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		5.7
(1.7)
A 		7
avr 2.3
(-3) 		7.2
(3) 		4.4
(-0.4) 		2.6
(-2.6) 		7.1
(2.9) 		5.8
(1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187324_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16731
Sequence Type Exemplar sequence
Representative Public ID C03B1.9 NCBI
Target Description C03B1.9 /REP_DB=WormBase Gene ID /WP=CE03910 /TR=SW:Q11115 /GB=AAA81738.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076662 NCBI Caenorhabditis elegans C03B1.9 (C03B1.9) mRNA, complete cds. 11/11 None
GENEFINDER00000009794 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6346315:6347069:-1 9/11 None
C03B1.9 ENSEMBL cdna:known chromosome:CEL140:X:6346198:6347069:-1 gene:C03B1.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009781 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6346197-6347069(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B1.9
Entrez Gene 182150 Entrez gene
SwissProt Q11115 EMBL-EBI
WormBase CE03910 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81738 Hypothetical protein C03B1.9 [Caenorhabditis elegans] ref|NP_509063.1| C03B1.9 [Caenorhabditis elegans] sp|Q11115|YX09_CAEEL Hypothetical protein C03B1.9 in chromosome X 1.0E-119
blast AAA81738 Hypothetical protein C03B1.9 [Caenorhabditis elegans] ref|NP_509063.1| C03B1.9 [Caenorhabditis elegans] sp|Q11115|YX09_CAEEL Hypothetical protein C03B1.9 in chromosome X 1.0E-107
blast CAE61244 Hypothetical protein CBG05045 [Caenorhabditis briggsae] 2.0E-16
blast CAE61244 Hypothetical protein CBG05045 [Caenorhabditis briggsae] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:187324_AT
ccaatgagtcagcactacacggcaccgttttgggtcacttgcttaacctcccgaatgtga
atacagaagttctgaaagctatttacaaaatgataactgttaatggcaaccaagacaaat
tgagtgatattggtatatctaaattcttaacaaaatggagaacggtttacttttccaata
aaaagccactaattgatgcacttaacaaccgattttacgatgatgttgttaatgaagagt
tcgagcatttcattaacaagcagaatgacaattatatggaagcgagagctgaaattggtc
tgctcattgagttatatcataaagattacctgaaaagtaactttctgaacaatgatgcac
tagaaaaactgatcattttgataattgctactgattacatgccgatgaacttttttccaa
tcttcaactactcttgttcaacaactgatcccagttttaaatcacacctcctgaattcaa
ttcaaaacctttttcttttgctgaatcagtttgtattgtgtataattaatcaagtttctg
tgtgtggttcaaaaccatttttctctttacatattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAATGAGTCAGCACTACACGGCAC 397 277 92 Antisense
CTACACGGCACCGTTTTGGGTCACT 449 225 106 Antisense
CTTGCTTAACCTCCCGAATGTGAAT 101 217 129 Antisense
GATGCACTTAACAACCGATTTTACG 228 413 286 Antisense
GCTGAAATTGGTCTGCTCATTGAGT 361 295 379 Antisense
ATTGCTACTGATTACATGCCGATGA 677 5 475 Antisense
TTTTTTCCAATCTTCAACTACTCTT 558 675 502 Antisense
ATCCCAGTTTTAAATCACACCTCCT 143 39 539 Antisense
AATCACACCTCCTGAATTCAATTCA 410 171 551 Antisense
AACCTTTTTCTTTTGCTGAATCAGT 331 147 577 Antisense
AAACCATTTTTCTCTTTACATATTG 652 125 643 Antisense
Sequence Source Affymetrix Proprietary Database