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[187323_at] serine carboxypeptidase

Description F13D12.6 /REP_DB=WormBase Gene ID /WP=CE02185 /TR=SW:P52715 /GB=CAA88947.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 33      4grp_high_8_8 > 51      6grp_highest_nonorm > 04      6grp_total > 06      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9110
1 2 3 4 range
A 9503.4
(3)
P 		7961.9
(2)
P 		8234.5
(2.2)
P 		393
(-3)
P 		9110
B 9072.5
(3)
P 		7172.6
(1.7)
P 		7425.9
(1.8)
P 		590.1
(-3)
P 		8482
C 8086.7
(3)
P 		6764.2
(1.9)
P 		6966.9
(2.1)
P 		538
(-3)
P 		7549
avr 8887.5
(3) 		7299.6
(1.9) 		7542.4
(2) 		507
(-3) 		8381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5105
1 2 3 4 5 6 range
A 7185.7
(3)
P 		5585.3
(0.9)
P 		4088.7
(-1)
P 		4220.3
(-0.9)
P 		2576.2
(-3)
P 		3408.8
(-1.9)
P 		4610
B 5485.7
(3)
P 		3949.5
(-0.2)
P 		4454.2
(0.9)
P 		3017.9
(-2.1)
P 		2738.7
(-2.7)
P 		2578.5
(-3)
P 		2907
C 7681.1
(3)
P 		3657.1
(-1.7)
P 		5837
(0.8)
P 		2848.5
(-2.7)
P 		4140.9
(-1.2)
P 		2594.4
(-3)
P 		5087
avr 6784.2
(3) 		4397.3
(-0.7) 		4793.3
(-0) 		3362.2
(-2.2) 		3151.9
(-2.6) 		2860.6
(-3) 		3924
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3403
1 2 3 4 range
A 3460.2
(3)
P 		1728.3
(-0.1)
P 		2152.7
(0.7)
P 		57.5
(-3)
P 		3403
B 2893.2
(3)
P 		1771.5
(0.6)
P 		1720.7
(0.5)
P 		125.8
(-3)
P 		2767
C 2676.9
(3)
P 		1944.7
(1.3)
P 		2428.2
(2.4)
P 		90.7
(-3)
P 		2586
avr 3010.1
(3) 		1814.8
(0.5) 		2100.5
(1.1) 		91.3
(-3) 		2919

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2274
1 2 3 4 5 6 range
A 1324.6
(-0.3)
P 		1986.4
(3)
P 		890.4
(-2.4)
P 		1070.4
(-1.5)
P 		777.4
(-3)
P 		829.9
(-2.7)
P 		1209
B 1908.8
(3)
P 		1314.6
(-0.2)
P 		1081.6
(-1.5)
P 		799.3
(-3)
P 		1112.7
(-1.3)
P 		961.5
(-2.1)
P 		1110
C 2847.1
(3)
P 		1115.9
(-1.6)
P 		1485.6
(-0.6)
P 		572.8
(-3)
P 		1339.9
(-1)
P 		868.5
(-2.2)
P 		2274
avr 2026.8
(3) 		1472.3
(0.3) 		1152.5
(-1.3) 		814.2
(-3) 		1076.7
(-1.7) 		886.6
(-2.6) 		1213
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187323_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3315
Sequence Type Exemplar sequence
Representative Public ID F13D12.6 NCBI
Target Description F13D12.6 /REP_DB=WormBase Gene ID /WP=CE02185 /TR=SW:P52715 /GB=CAA88947.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064106(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064106 NCBI Caenorhabditis elegans F13D12.6 (F13D12.6) mRNA, complete cds. 11/11 A 
SNAP00000015033 ENSEMBL cdna:SNAP chromosome:CEL140:II:11739426:11742652:1 11/11 None
GENEFINDER00000015054 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11739426:11742652:1 11/11 None
F13D12.6.1 ENSEMBL cdna:known chromosome:CEL140:II:11739366:11743009:1 gene:F13D12.6 11/11 A 
F13D12.6.2 ENSEMBL cdna:known chromosome:CEL140:II:11739389:11742781:1 gene:F13D12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11739422-11742649(+) 100.0 100.0
Public Domain and Genome References
Gene Title serine carboxypeptidase
Ensembl F13D12.6
Entrez Gene 174802 Entrez gene
SwissProt P52715 EMBL-EBI
WormBase CE02185 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17814_AT serine carboxypeptidase S10 family protein at
ATH1-121501:252085_S_AT serine carboxypeptidase S10 family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4185 serine carboxypeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88947 Hypothetical protein F13D12.6 [Caenorhabditis elegans] ref|NP_496507.1| F13D12.6 [Caenorhabditis elegans] sp|P52715|YUA6_CAEEL Putative serine carboxypeptidase F13S12.6 precursor 0.0
blast CAE59701 Hypothetical protein CBG03132 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001563 EMBL-EBI Peptidase S10, serine carboxypeptidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496507.1 1 7-29
F13D12.6.1 1 7-29
F13D12.6.2 1 7-29
SNAP00000015033 1 7-29
GENEFINDER00000015054 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:187323_AT
tacccaacagaccgcctggaacggaggtctcaacccatacaacatgtacgccgactgcat
ctccaccagcgcaagcttccgtttcggaatggagtatgagagaagattcaataagaagta
cacaccagaggttcttggaaccgttccatgtcttgatgagagcccagtaaccaattattt
gaaccgtcaggatgtgcgtaaggcactcggaattccatcttctcttccagcttggtcgat
ttgcagtaacgccatctcgtacggttacaagagacaatacggagacatgacttcccgtgt
tctgaacgccgtcaacaacaacaatctgaaaatgatgctctacaacggagacgtcgattt
ggcctgtaatgctcttatgggacagagattcactgacaagctcggtcttacgctctccaa
gaagaagacccacttcactgtgaagggtcaaatcggtggatacgtgacacagtacaaggg
atcccaggtgacattcgccactgttcgcggagccggacacatggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCCAACAGACCGCCTGGAACGGA 232 649 786 Antisense
ACGGAGGTCTCAACCCATACAACAT 12 95 806 Antisense
ATACAACATGTACGCCGACTGCATC 364 25 822 Antisense
GGAACCGTTCCATGTCTTGATGAGA 267 529 922 Antisense
TAAGGCACTCGGAATTCCATCTTCT 489 637 984 Antisense
TTCTCTTCCAGCTTGGTCGATTTGC 674 691 1005 Antisense
TTTGCAGTAACGCCATCTCGTACGG 666 665 1025 Antisense
CGTGTTCTGAACGCCGTCAACAACA 457 243 1081 Antisense
AACGGAGACGTCGATTTGGCCTGTA 123 143 1129 Antisense
CAAGGGATCCCAGGTGACATTCGCC 122 185 1260 Antisense
CTGTTCGCGGAGCCGGACACATGGT 704 237 1286 Antisense
Sequence Source Affymetrix Proprietary Database