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[187322_at]

Description C03B1.7 /REP_DB=WormBase Gene ID /WP=CE03909 /TR=SW:Q11114 /GB=AAA81737.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 07      6grp_total > 56      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 149.6
(-0.5)
M 		119.4
(-3)
P 		119.8
(-3)
A 		192.1
(3)
P 		73
B 135.7
(0.2)
P 		73
(-3)
P 		165.2
(1.6)
P 		192.3
(3)
P 		119
C 160.6
(-0.8)
P 		105.6
(-3)
A 		106.3
(-3)
P 		254.1
(3)
P 		149
avr 148.6
(-0.4) 		99.3
(-3) 		130.4
(-1.4) 		212.8
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 105.5
(-0.7)
A 		115.3
(0.5)
P 		99.7
(-1.4)
P 		134.2
(2.9)
A 		87.4
(-3)
P 		135
(3)
P 		48
B 92.9
(-1.2)
A 		92.1
(-1.4)
P 		100.2
(-0.2)
M 		80.4
(-3)
P 		95.5
(-0.9)
M 		123
(3)
P 		43
C 97.3
(-1.8)
A 		147.4
(2.6)
P 		149.8
(2.8)
P 		84.3
(-3)
A 		95.8
(-2)
A 		151.7
(3)
P 		67
avr 98.6
(-2.2) 		118.3
(0.5) 		116.6
(0.3) 		99.6
(-2.1) 		92.9
(-3) 		136.6
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 54.5
(3)
M 		25.9
(-3)
P 		31.3
(-1.9)
A 		28.1
(-2.5)
P 		29
B 43.3
(3)
P 		18
(-3)
P 		38.3
(1.8)
P 		41
(2.5)
P 		25
C 53.2
(3)
P 		30.4
(-3)
A 		37
(-1.3)
P 		42.8
(0.3)
P 		23
avr 50.3
(3) 		24.8
(-3) 		35.5
(-0.5) 		37.3
(-0.1) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 19.5
(-3)
A 		41
(3)
P 		21.7
(-2.4)
P 		34
(1)
A 		26.4
(-1.1)
P 		32.9
(0.7)
P 		22
B 32.3
(-0.3)
A 		30.6
(-0.7)
P 		24.3
(-2.3)
M 		21.3
(-3)
P 		38.8
(1.3)
M 		45.9
(3)
P 		25
C 36.1
(0.4)
A 		45
(2)
P 		38.1
(0.8)
P 		16.9
(-3)
A 		31
(-0.5)
A 		50.8
(3)
P 		34
avr 29.3
(-1.4) 		38.9
(1.6) 		28
(-1.8) 		24.1
(-3) 		32.1
(-0.5) 		43.2
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16603
Sequence Type Exemplar sequence
Representative Public ID C03B1.7 NCBI
Target Description C03B1.7 /REP_DB=WormBase Gene ID /WP=CE03909 /TR=SW:Q11114 /GB=AAA81737.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076661(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076661 NCBI Caenorhabditis elegans C03B1.7 (C03B1.7) mRNA, complete cds. 11/11 None
GENEFINDER00000009801 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6341661:6345601:1 11/11 None
C03B1.7 ENSEMBL cdna:known chromosome:CEL140:X:6342112:6345601:1 gene:C03B1.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009780 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6342111-6345601(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B1.7
Entrez Gene 182149 Entrez gene
SwissProt Q11114 EMBL-EBI
WormBase CE03909 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81737 Hypothetical protein C03B1.7 [Caenorhabditis elegans] ref|NP_509062.1| C03B1.7 [Caenorhabditis elegans] sp|Q11114|YX07_CAEEL Hypothetical protein C03B1.7 in chromosome X 0.0
blast CAE61243 Hypothetical protein CBG05043 [Caenorhabditis briggsae] 1.0E-143
blast CAE61243 Hypothetical protein CBG05043 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009801 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:187322_AT
gttactcgactccaaaatatctcataatgcaatacaagataacagttgttccgaagattt
tgaattcggatcttcatccagtacgaattttgtgacaggatctagcagaagtttattgcc
agagttagatgcggattttgttcgaaaaacacttgccgattacgaggaaaatgcaacaga
agatgctgctgaaaataacaatgaggtgtttgagtcggctagcgaagagttagaaatgtt
catgaattcggaaggtattgcgccaaatttccattcagaatttgcaaagaaaacttctcc
gcttctcgttggtaatgcagaattcaaggatttttgcagcaagtattcaaattcaaaata
tgataataagacaatctcaaaactggtcaagaaatacattgacaccagaattgtacacca
ttacgagagattcaaaaagcttgctgacagggaatcgcacagaattgccaaaagctggac
aaaaatctacgagacttcctcatattcattgatggtcatgctctacaccaatagccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACTCGACTCCAAAATATCTCAT 141 447 1878 Antisense
GATTTTGAATTCGGATCTTCATCCA 651 429 1933 Antisense
GAAAAACACTTGCCGATTACGAGGA 405 353 2021 Antisense
TGAGGTGTTTGAGTCGGCTAGCGAA 592 567 2079 Antisense
GTATTGCGCCAAATTTCCATTCAGA 306 453 2132 Antisense
GCAAAGAAAACTTCTCCGCTTCTCG 547 315 2161 Antisense
CTCCGCTTCTCGTTGGTAATGCAGA 145 235 2174 Antisense
ATTGACACCAGAATTGTACACCATT 508 5 2275 Antisense
GCTTGCTGACAGGGAATCGCACAGA 351 307 2316 Antisense
AATCTACGAGACTTCCTCATATTCA 475 169 2361 Antisense
TGGTCATGCTCTACACCAATAGCCC 169 553 2390 Antisense
Sequence Source Affymetrix Proprietary Database