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[187321_s_at]

Description Y110A7A.16 /REP_DB=WormBase Gene ID /WP=CE28103 /TR=Q9N595 /GB=AAF60430.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 112.1
(-0.7)
P 		80.5
(-2.3)
A 		67.3
(-3)
A 		183.5
(3)
P 		116
B 151.7
(3)
P 		139.3
(1.7)
A 		117.9
(-0.5)
A 		94.2
(-3)
P 		58
C 167
(2.3)
P 		94
(-3)
A 		112.8
(-1.6)
A 		177.1
(3)
A 		83
avr 143.6
(2.1) 		104.6
(-2.4) 		99.3
(-3) 		151.6
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 73.5
(-2.2)
A 		81.9
(-1.8)
A 		101.5
(-1)
P 		105.2
(-0.8)
A 		56.1
(-3)
P 		189.8
(3)
M 		134
B 117.3
(-0.6)
P 		103.4
(-1.2)
P 		145.9
(0.6)
M 		60
(-3)
A 		103
(-1.2)
P 		205
(3)
P 		145
C 87.4
(-1.8)
P 		115.6
(-0.1)
P 		65.9
(-3)
A 		111.6
(-0.3)
A 		85.4
(-1.9)
A 		169.2
(3)
P 		103
avr 92.7
(-2.4) 		100.3
(-1.9) 		104.4
(-1.7) 		92.3
(-2.4) 		81.5
(-3) 		188
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 40.8
(3)
P 		17.5
(-3)
A 		17.6
(-3)
A 		26.9
(-0.6)
P 		23
B 48.4
(3)
P 		34.4
(0)
A 		27.3
(-1.5)
A 		20.1
(-3)
P 		28
C 55.3
(3)
P 		27
(-3)
A 		39.3
(-0.4)
A 		29.9
(-2.4)
A 		28
avr 48.2
(3) 		26.3
(-2.8) 		28.1
(-2.3) 		25.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 13.5
(-3)
A 		29.1
(-0.1)
A 		22.1
(-1.4)
P 		26.7
(-0.6)
A 		16.9
(-2.4)
P 		46.2
(3)
M 		33
B 40.8
(-0.5)
P 		34.4
(-1.2)
P 		35.4
(-1.1)
M 		15.9
(-3)
A 		41.9
(-0.4)
P 		76.4
(3)
P 		61
C 32.4
(-0.6)
P 		35.3
(-0.2)
P 		16.8
(-3)
A 		22.4
(-2.2)
A 		27.6
(-1.4)
A 		56.6
(3)
P 		40
avr 28.9
(-1.9) 		32.9
(-1.2) 		24.8
(-2.5) 		21.7
(-3) 		28.8
(-1.9) 		59.7
(3) 		38
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187321_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1650
Sequence Type Exemplar sequence
Representative Public ID Y110A7A.16 NCBI
Target Description Y110A7A.16 /REP_DB=WormBase Gene ID /WP=CE28103 /TR=Q9N595 /GB=AAF60430.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059123 NCBI Caenorhabditis elegans Y110A7A.16 (Y110A7A.16) mRNA, complete cds. 11/11 A 
GENEFINDER00000029238 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5110142:5118850:-1 11/11 None
SNAP00000029207 ENSEMBL cdna:SNAP chromosome:CEL140:I:5114202:5118850:-1 11/11 None
Y110A7A.16 ENSEMBL cdna:known chromosome:CEL140:I:5113700:5118850:-1 gene:Y110A7A.16 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5114742-5118850(-) 97.68 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A7A.16
Entrez Gene 172143 Entrez gene
SwissProt Q9N595 EMBL-EBI
WormBase CE28103 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60430 Hypothetical protein Y110A7A.16 [Caenorhabditis elegans] ref|NP_491524.1| Y110A7A.16 [Caenorhabditis elegans] 0.0
blast CAE65740 Hypothetical protein CBG10825 [Caenorhabditis briggsae] 0.0
blast AAF60429 Hypothetical protein Y110A7A.15a [Caenorhabditis elegans] ref|NP_491523.2| Y110A7A.15a [Caenorhabditis elegans] 0.0
blast EAA71039 hypothetical protein FG04361.1 [Gibberella zeae PH-1] ref|XP_384537.1| hypothetical protein FG04361.1 [Gibberella zeae PH-1] 4.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR006849 EMBL-EBI IKI3 family 1.0E-126
Pfam IPR006849 EMBL-EBI IKI3 family 1.0E-126
Pfam IPR006849 EMBL-EBI IKI3 family 1.0E-126
Pfam IPR006849 EMBL-EBI IKI3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029238 5 1283-1305,1843-1865,1870-1892,1905-1927,1937-1959
Sequence
Target Sequence 
>C. ELEGANS:187321_S_AT
tgttgatggtcttgccgcatcagctcgtcgacttgcagttgatgctggaaagttgaagat
tcatgcaattaaaatgagtacaactcttcgagaagcacgacagccgaaggaattggcgaa
ggctctgaaattggccggttcgtcgagcactcaaattgtacatgttctctgtgatgcgtt
tgaatggttagacgcgagtcgagaagttgaagtaggaaaagaggaagcgctgaaaaaggc
tgcattgagcagaaatgatcaagttttgatggatttagaacgaagaaaaactgaattcga
gaactacaaaaagagattggctgtagttcgagagaacaagttgaagagagttgaacagtt
tgcagctggagaagttgacgatttgagagatgatatttcagttatttccagtataagttc
aagatcaggatcatcgaaagtttcgatggcgtcgactgttagaaggcggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTGATGGTCTTGCCGCATCAGCT 526 561 2931 Antisense
CATCAGCTCGTCGACTTGCAGTTGA 501 213 2948 Antisense
ACTCTTCGAGAAGCACGACAGCCGA 186 101 3013 Antisense
AGGCTCTGAAATTGGCCGGTTCGTC 667 35 3050 Antisense
CCGGTTCGTCGAGCACTCAAATTGT 513 263 3065 Antisense
GTACATGTTCTCTGTGATGCGTTTG 280 461 3088 Antisense
GTTTGAATGGTTAGACGCGAGTCGA 3 453 3108 Antisense
GAGATTGGCTGTAGTTCGAGAGAAC 119 397 3243 Antisense
GATGATATTTCAGTTATTTCCAGTA 112 411 3319 Antisense
GAAAGTTTCGATGGCGTCGACTGTT 251 359 3366 Antisense
GGCGTCGACTGTTAGAAGGCGGAAG 100 541 3378 Antisense
Sequence Source Affymetrix Proprietary Database