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[187320_at]

Description C03B1.3 /REP_DB=WormBase Gene ID /WP=CE03905 /TR=SW:Q11110 /GB=AAA81743.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 2.1
(-3)
A 		6
(-0.4)
A 		3.6
(-2)
A 		11
(3)
A 		9
B 2.5
(-1.1)
A 		4.2
(3)
A 		2.2
(-1.8)
A 		1.7
(-3)
A 		3
C 4.2
(-2.6)
A 		3.5
(-2.8)
A 		2.5
(-3)
A 		29.6
(3)
A 		27
avr 2.9
(-2.9) 		4.6
(-2) 		2.8
(-3) 		14.1
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 10.5
(3)
A 		2.9
(-2.3)
A 		3
(-2.2)
A 		2.1
(-2.9)
A 		4.3
(-1.3)
A 		1.9
(-3)
A 		9
B 3.7
(0.4)
A 		5.3
(3)
A 		3.6
(0.2)
A 		3.2
(-0.4)
A 		1.6
(-3)
A 		4.7
(2)
A 		4
C 2.6
(-2.8)
A 		32.8
(3)
A 		12.3
(-0.9)
A 		2.6
(-2.8)
A 		1.7
(-2.9)
A 		1.3
(-3)
A 		32
avr 5.6
(-1.3) 		13.7
(3) 		6.3
(-1) 		2.6
(-2.9) 		2.5
(-3) 		2.6
(-2.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.8
(-3)
A 		1.3
(0.8)
A 		0.9
(-2.3)
A 		1.6
(3)
A 		1
B 0.8
(1)
A 		1
(3)
A 		0.5
(-2)
A 		0.4
(-3)
A 		1
C 1.4
(-2.3)
A 		1
(-2.9)
A 		0.9
(-3)
A 		5
(3)
A 		4
avr 1
(-2.2) 		1.1
(-1.8) 		0.8
(-3) 		2.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.9
(3)
A 		1
(-0.9)
A 		0.7
(-2.1)
A 		0.5
(-3)
A 		1.3
(0.4)
A 		0.5
(-3)
A 		1
B 1.3
(0.3)
A 		1.8
(3)
A 		0.9
(-1.9)
A 		0.9
(-1.9)
A 		0.7
(-3)
A 		1.8
(3)
A 		1
C 1
(-2.6)
A 		10
(3)
A 		3.1
(-1.3)
A 		0.5
(-2.9)
A 		0.6
(-2.9)
A 		0.4
(-3)
A 		10
avr 1.4
(-1.7) 		4.3
(3) 		1.6
(-1.4) 		0.6
(-3) 		0.9
(-2.5) 		0.9
(-2.5) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187320_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17301
Sequence Type Exemplar sequence
Representative Public ID C03B1.3 NCBI
Target Description C03B1.3 /REP_DB=WormBase Gene ID /WP=CE03905 /TR=SW:Q11110 /GB=AAA81743.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076668(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076668 NCBI Caenorhabditis elegans C03B1.3 (C03B1.3) mRNA, complete cds. 11/11 None
SNAP00000009787 ENSEMBL cdna:SNAP chromosome:CEL140:X:6365971:6366787:1 11/11 None
GENEFINDER00000009796 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6365971:6366787:1 11/11 None
C03B1.3 ENSEMBL cdna:known chromosome:CEL140:X:6365971:6366787:1 gene:C03B1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6365970-6366787(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B1.3
Entrez Gene 182146 Entrez gene
SwissProt Q11110 EMBL-EBI
WormBase CE03905 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81743 Hypothetical protein C03B1.3 [Caenorhabditis elegans] ref|NP_509069.1| C03B1.3 [Caenorhabditis elegans] sp|Q11110|YX03_CAEEL Hypothetical protein C03B1.3 in chromosome X 5.0E-55
blast CAE61247 Hypothetical protein CBG05050 [Caenorhabditis briggsae] 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:187320_AT
acctatcattcctctaaacctgacgctgtctcatatattgggacgaattcagcgaaagta
tccaaacgcgaccatcgatgctcagagaatcagtgctcatatgggtgaattcagagttct
ggaatgttatttcaatatgacacgcgtcgccattagagcaataacttacccgcaagatga
gaatggaaaagaatcatgtgcttctggggaagtacattatcactgggcatgcttctgcgg
tgtatcacctaatcttcaagttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTATCATTCCTCTAAACCTGACG 331 85 18 Antisense
AAACCTGACGCTGTCTCATATATTG 79 127 33 Antisense
GAAAGTATCCAAACGCGACCATCGA 514 359 71 Antisense
ACGCGACCATCGATGCTCAGAGAAT 692 89 83 Antisense
GAATCAGTGCTCATATGGGTGAATT 540 327 104 Antisense
ATTTCAATATGACACGCGTCGCCAT 52 17 146 Antisense
ACGCGTCGCCATTAGAGCAATAACT 540 89 159 Antisense
GAGCAATAACTTACCCGCAAGATGA 416 391 173 Antisense
ACATTATCACTGGGCATGCTTCTGC 163 105 231 Antisense
CATGCTTCTGCGGTGTATCACCTAA 509 209 245 Antisense
GGTGTATCACCTAATCTTCAAGTTT 479 499 256 Antisense
Sequence Source Affymetrix Proprietary Database