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[187316_s_at]

Description C56G2.7 /REP_DB=WormBase Gene ID /WP=CE01876 /TR=SW:Q09289 /GB=AAA64334.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 77      6grp_total > 85      4grp_total > 32      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 705
1 2 3 4 range
A 1121
(-3)
P 		1625.7
(1.7)
P 		1761.2
(3)
P 		1723.5
(2.6)
P 		640
B 1193
(-3)
P 		1622.3
(1.1)
P 		1826.2
(3)
P 		1634.7
(1.2)
P 		633
C 1136.9
(-3)
P 		1591.2
(1.6)
P 		1726.6
(3)
P 		1716.6
(2.9)
P 		590
avr 1150.3
(-3) 		1613.1
(1.5) 		1771.3
(3) 		1691.6
(2.2) 		621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 1098.4
(-3)
P 		1171.2
(-1.8)
P 		1364.4
(1.6)
P 		1297.1
(0.4)
P 		1266.9
(-0.1)
P 		1448.2
(3)
P 		350
B 1250
(-0.3)
P 		1102.2
(-3)
P 		1223.6
(-0.8)
P 		1328
(1.1)
P 		1422.9
(2.8)
P 		1435.4
(3)
P 		333
C 1227.2
(-1.3)
P 		1149.5
(-3)
P 		1355.5
(1.6)
P 		1299.8
(0.4)
P 		1416.3
(3)
P 		1301.9
(0.4)
P 		267
avr 1191.9
(-1.8) 		1141
(-3) 		1314.5
(1.1) 		1308.3
(0.9) 		1368.7
(2.4) 		1395.2
(3) 		254
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 350
1 2 3 4 range
A 408.2
(1.5)
P 		352.9
(-0.1)
P 		460.4
(3)
P 		252.3
(-3)
P 		208
B 380.4
(-0.4)
P 		400.7
(1.2)
P 		423.2
(3)
P 		348.3
(-3)
P 		75
C 376.3
(-1.3)
P 		457.5
(0.2)
P 		601.8
(3)
P 		289.4
(-3)
P 		312
avr 388.3
(-0.2) 		403.7
(0.2) 		495.1
(3) 		296.7
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 202.5
(-3)
P 		416.5
(3)
P 		297.1
(-0.3)
P 		329
(0.5)
P 		382.3
(2)
P 		352.6
(1.2)
P 		214
B 434.9
(-0.1)
P 		366.9
(-1.5)
P 		297.1
(-3)
P 		351.8
(-1.8)
P 		578.1
(3)
P 		535.3
(2.1)
P 		281
C 454.9
(2.9)
P 		350.7
(-0.3)
P 		345
(-0.5)
P 		261.4
(-3)
P 		458.3
(3)
P 		435.8
(2.3)
P 		197
avr 364.1
(-1.1) 		378
(-0.6) 		313.1
(-3) 		314.1
(-3) 		472.9
(3) 		441.2
(1.8) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187316_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6754
Sequence Type Exemplar sequence
Representative Public ID C56G2.7 NCBI
Target Description C56G2.7 /REP_DB=WormBase Gene ID /WP=CE01876 /TR=SW:Q09289 /GB=AAA64334.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065986 NCBI Caenorhabditis elegans C56G2.7 (C56G2.7) mRNA, complete cds. 11/11 None
SNAP00000001583 ENSEMBL cdna:SNAP chromosome:CEL140:III:6340321:6341863:-1 11/11 None
GENEFINDER00000001595 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6340321:6341863:-1 11/11 None
C56G2.7 ENSEMBL cdna:known chromosome:CEL140:III:6338474:6341865:-1 gene:C56G2.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6340319-6343226(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56G2.7
Entrez Gene 3565888 Entrez gene
SwissProt Q09289 EMBL-EBI
WormBase CE30640 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245045_AT adhesion regulating molecule family at
CANINE:1586750_AT similar to Adhesion regulating molecule 1 precursor (110 kDa cell membrane glycoprotein) (Gp110) cfa
CANINE_2:CFA.7263.1.S1_S_AT similar to Adhesion regulating molecule 1 precursor (110 kDa cell membrane glycoprotein) (Gp110) cfa
DROSOPHILA_2:1629266_S_AT dm
DROSGENOME1:147178_AT dm
CHICKEN:GGA.4135.2.S1_A_AT adhesion regulating molecule 1 gga
HG-U133_PLUS_2:201281_AT adhesion regulating molecule 1 hs
HG-U133A:201281_AT adhesion regulating molecule 1 hs
HG-FOCUS:201281_AT adhesion regulating molecule 1 hs
HG-U133A_2:201281_AT adhesion regulating molecule 1 hs
HUGENEFL:D64154_AT adhesion regulating molecule 1 hs
U133_X3P:G5901959_3P_AT adhesion regulating molecule 1 hs
HG-U95AV2:38808_AT adhesion regulating molecule 1 hs
HG-U95E:72996_AT Adhesion regulating molecule 1 hs
HG-U133_PLUS_2:229811_AT Adhesion regulating molecule 1 hs
HG-U133B:229811_AT Adhesion regulating molecule 1 hs
HG-U95B:55515_AT Adhesion regulating molecule 1 hs
HU35KSUBD:RC_AA459658_AT Adhesion regulating molecule 1 hs
U133_X3P:HS.97282.0.A1_3P_AT Adhesion regulating molecule 1 hs
MU11KSUBA:AA271499_S_AT adhesion regulating molecule 1 mm
MG-U74AV2:97875_AT adhesion regulating molecule 1 mm
MG-U74CV2:169320_AT adhesion regulating molecule 1 mm
MOE430A:1438170_X_AT adhesion regulating molecule 1 mm
MOUSE430A_2:1438170_X_AT adhesion regulating molecule 1 mm
MOUSE430_2:1438170_X_AT adhesion regulating molecule 1 mm
MOE430A:1419263_A_AT adhesion regulating molecule 1 mm
MOUSE430A_2:1419263_A_AT adhesion regulating molecule 1 mm
MOUSE430_2:1419263_A_AT adhesion regulating molecule 1 mm
MU19KSUBB:TC30964_AT Adhesion regulating molecule 1, mRNA (cDNA clone MGC:28271 IMAGE:4008987) mm
MU19KSUBB:TC30964_G_AT Adhesion regulating molecule 1, mRNA (cDNA clone MGC:28271 IMAGE:4008987) mm
RG-U34C:RC_AI136554_AT adhesion regulating molecule 1 rn
RAE230A:1367868_AT adhesion regulating molecule 1 rn
RAT230_2:1367868_AT adhesion regulating molecule 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7155 cell adhesion inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM22055 Hypothetical protein C56G2.7 [Caenorhabditis elegans] ref|NP_498387.2| C56G2.7 [Caenorhabditis elegans] sp|Q09289|YQK7_CAEEL Hypothetical protein C56G2.7 in chromosome III 0.0
blast T15868 hypothetical protein C56G2.7 - Caenorhabditis elegans 0.0
blast CAE72514 Hypothetical protein CBG19693 [Caenorhabditis briggsae] 1.0E-167
blast CAE72514 Hypothetical protein CBG19693 [Caenorhabditis briggsae] 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR006773 EMBL-EBI Adhesion regulating molecule 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187316_S_AT
tgcaaggcggaaactctgacactcttccaatttcttccgtgcctcgaggagaggacgcat
cgtcagaagcagactgcgagccttcgacgaatgcagctgaggaaggatcttcaaatccac
tttccttgaataacccggcgattcaacaaatcttcaacaacttgggacgctcacaaaaga
aagaggtggcagtctctctggcaactgctctgtcgaatgaaacggttgctgaagttgctc
gtaaccacgctgaagagctcgcaccgcatcttccaacttctgatgatccagcccgggagc
tttctgagacagtcagaactccgcaattcagacaagctgctgatacacttggacatgcac
ttcaaactggtcaactcgggccagtagttgcacagttcggaatggatgaagccacagttg
gctccgcgaatcaaggtgatattcgtggttttgctgctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAAGGCGGAAACTCTGACACTCT 385 575 1085 Antisense
GCGAGCCTTCGACGAATGCAGCTGA 587 289 1160 Antisense
CACTTTCCTTGAATAACCCGGCGAT 229 195 1202 Antisense
GAAAGAGGTGGCAGTCTCTCTGGCA 127 361 1263 Antisense
TCTGGCAACTGCTCTGTCGAATGAA 99 607 1281 Antisense
TGCTGAAGTTGCTCGTAACCACGCT 685 577 1311 Antisense
GACAGTCAGAACTCCGCAATTCAGA 239 369 1392 Antisense
GCTGATACACTTGGACATGCACTTC 669 295 1423 Antisense
GCACTTCAAACTGGTCAACTCGGGC 524 305 1441 Antisense
ACTCGGGCCAGTAGTTGCACAGTTC 459 97 1458 Antisense
GTGATATTCGTGGTTTTGCTGCTAA 43 485 1520 Antisense
Sequence Source Affymetrix Proprietary Database