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[187314_at]

Description C56G2.3 /REP_DB=WormBase Gene ID /WP=CE01872 /TR=SW:Q09287 /GB=AAA64330.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 56.9
(-0.5)
A 		33.7
(-3)
A 		56.2
(-0.6)
A 		90.1
(3)
M 		56
B 46
(-0.8)
A 		84.2
(3)
A 		24.4
(-3)
A 		80.9
(2.7)
A 		60
C 45.3
(-3)
A 		131.3
(3)
A 		60.9
(-1.9)
A 		92.5
(0.3)
A 		86
avr 49.4
(-2.7) 		83.1
(2.3) 		47.2
(-3) 		87.8
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 53.3
(0.2)
A 		57.8
(0.5)
A 		38
(-1)
A 		91
(3)
A 		34.1
(-1.3)
A 		11.5
(-3)
A 		80
B 49.4
(2.2)
A 		50.7
(3)
A 		46.6
(0.4)
A 		42.4
(-2.3)
A 		41.3
(-3)
A 		49
(1.9)
A 		9
C 10.8
(-1.8)
A 		23.4
(0.3)
A 		39.6
(3)
A 		21.1
(-0.1)
A 		3.6
(-3)
A 		23.5
(0.3)
A 		36
avr 37.8
(-0.3) 		44
(1.2) 		41.4
(0.6) 		51.5
(3) 		26.3
(-3) 		28
(-2.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 20.7
(3)
A 		7.3
(-3)
A 		14.7
(0.3)
A 		13.2
(-0.4)
M 		13
B 14.7
(0.6)
A 		20.8
(3)
A 		5.7
(-3)
A 		17.2
(1.6)
A 		15
C 15
(-3)
A 		37.7
(3)
A 		21.2
(-1.4)
A 		15.6
(-2.8)
A 		23
avr 16.8
(-0.8) 		21.9
(3) 		13.9
(-3) 		15.3
(-2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.8
(-0.9)
A 		20.5
(2.2)
A 		8.3
(-1.4)
A 		23.1
(3)
A 		10.3
(-0.8)
A 		2.8
(-3)
A 		20
B 17.2
(2.1)
A 		16.9
(1.8)
A 		11.3
(-2.9)
A 		11.2
(-3)
A 		16.8
(1.7)
A 		18.3
(3)
A 		7
C 4
(-1.1)
A 		7.1
(1)
A 		10.1
(3)
A 		4.2
(-1)
A 		1.2
(-3)
A 		7.9
(1.5)
A 		9
avr 10.3
(-2) 		14.8
(3) 		9.9
(-2.4) 		12.8
(0.8) 		9.4
(-3) 		9.7
(-2.7) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6858
Sequence Type Exemplar sequence
Representative Public ID C56G2.3 NCBI
Target Description C56G2.3 /REP_DB=WormBase Gene ID /WP=CE01872 /TR=SW:Q09287 /GB=AAA64330.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065987(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065987 NCBI Caenorhabditis elegans C56G2.3 (C56G2.3) mRNA, complete cds. 11/11 None
SNAP00000001585 ENSEMBL cdna:SNAP chromosome:CEL140:III:6346655:6347996:1 11/11 None
GENEFINDER00000001598 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6346655:6347996:1 11/11 None
C56G2.3 ENSEMBL cdna:known chromosome:CEL140:III:6346916:6347996:1 gene:C56G2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6346914-6347995(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56G2.3
Entrez Gene 183866 Entrez gene
SwissProt Q09287 EMBL-EBI
WormBase CE01872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64330 Hypothetical protein C56G2.3 [Caenorhabditis elegans] ref|NP_498388.1| C56G2.3 [Caenorhabditis elegans] sp|Q09287|YQK3_CAEEL Hypothetical protein C56G2.3 in chromosome III 1.0E-175
blast CAE64416 Hypothetical protein CBG09110 [Caenorhabditis briggsae] 1.0E-157
blast CAE64416 Hypothetical protein CBG09110 [Caenorhabditis briggsae] 1.0E-137
blast AAK21389 Hypothetical protein F46F11.10 [Caenorhabditis elegans] 6.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR007356 EMBL-EBI Protein of unknown function DUF425 5.1E-9
Pfam IPR007356 EMBL-EBI Protein of unknown function DUF425 5.1E-9
Sequence
Target Sequence 
>C. ELEGANS:187314_AT
taaacgcgattctggagagctcggaaatcaaatgcagtacacgatcagcgagaatttctc
ggccaaaagtccatttgttctggattttgtcaattctccatctaaagaatttttggaaca
atggttgtcgaaaagtgttggatattacacgggaaattatataaaccaaacgattctgcc
ggatttctcgacaaagggaatcaaagaattctatggaaaatctgcgaacactatctacat
atcatcaaacgctagagatgttctcgatggtccactcactgccgatgtaattggaatttg
tgtcactatgggacggaaacgagaagctttgagcgctgctcgtcgtgccaatattcgcgc
ctatagattaccgattcatcgatacgtgaaatggaagtcggggccacaatatttaccgtt
tcccaatataatgaatgtgctccgcgaagtttacatgaatggtggagactggagccgtgc
tctacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAACGCGATTCTGGAGAGCTCGGA 612 639 348 Antisense
GAATTTCTCGGCCAAAAGTCCATTT 141 323 399 Antisense
GGATTTTGTCAATTCTCCATCTAAA 457 509 429 Antisense
AAACGATTCTGCCGGATTTCTCGAC 276 127 515 Antisense
AATCTGCGAACACTATCTACATATC 191 169 566 Antisense
GTCCACTCACTGCCGATGTAATTGG 442 477 617 Antisense
CGAGAAGCTTTGAGCGCTGCTCGTC 337 251 667 Antisense
GCCAATATTCGCGCCTATAGATTAC 359 277 694 Antisense
GAAGTCGGGGCCACAATATTTACCG 91 337 741 Antisense
GTGCTCCGCGAAGTTTACATGAATG 639 477 784 Antisense
TGGAGACTGGAGCCGTGCTCTACAC 62 549 810 Antisense
Sequence Source Affymetrix Proprietary Database