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[187313_s_at]

Description Y110A7A.19 /REP_DB=WormBase Gene ID /WP=CE23238 /TR=Q9N584 /GB=AAF60413.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 36      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 75      6grp_total > 35      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 878
1 2 3 4 range
A 1139.7
(2.6)
P 		1057.7
(2)
P 		1190.2
(3)
P 		419.5
(-3)
P 		771
B 1105.8
(2.9)
P 		1105.9
(2.9)
P 		1117.8
(3)
P 		452.2
(-3)
P 		666
C 1125
(1.8)
P 		1134.4
(1.9)
P 		1297.6
(3)
P 		420.5
(-3)
P 		877
avr 1123.5
(2.4) 		1099.3
(2.2) 		1201.9
(3) 		430.7
(-3) 		771

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 421
1 2 3 4 5 6 range
A 1033.2
(3)
P 		890
(0.9)
P 		894.5
(1)
P 		666.5
(-2.3)
P 		621.3
(-3)
P 		775.3
(-0.8)
P 		412
B 984.2
(3)
P 		943.3
(2.3)
P 		792.9
(-0.1)
P 		740.4
(-1)
P 		615.4
(-3)
P 		731.6
(-1.1)
P 		369
C 860.3
(1.8)
P 		923
(3)
P 		797.7
(0.6)
P 		769.4
(0)
P 		612.3
(-3)
P 		762.5
(-0.1)
P 		311
avr 959.2
(3) 		918.8
(2.3) 		828.4
(0.7) 		725.4
(-1.1) 		616.3
(-3) 		756.5
(-0.5) 		343
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 391
1 2 3 4 range
A 414.9
(3)
P 		229.6
(-0.1)
P 		311.1
(1.2)
P 		61.4
(-3)
P 		354
B 352.6
(3)
P 		273.1
(1.1)
P 		259
(0.8)
P 		96.4
(-3)
P 		256
C 372.4
(1.7)
P 		326.2
(1)
P 		452.3
(3)
P 		70.9
(-3)
P 		381
avr 380
(3) 		276.3
(1) 		340.8
(2.2) 		76.2
(-3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 188
1 2 3 4 5 6 range
A 190.5
(-2.1)
P 		316.5
(3)
P 		194.8
(-2)
P 		169
(-3)
P 		187.5
(-2.2)
P 		188.8
(-2.2)
P 		148
B 342.5
(3)
P 		314
(1.9)
P 		192.5
(-3)
P 		196.1
(-2.9)
P 		250
(-0.7)
P 		272.8
(0.2)
P 		150
C 318.9
(3)
P 		281.6
(1.6)
P 		203
(-1.2)
P 		154.7
(-3)
P 		198.1
(-1.4)
P 		255.2
(0.7)
P 		164
avr 284
(2.1) 		304
(3) 		196.8
(-1.9) 		173.3
(-3) 		211.9
(-1.2) 		238.9
(0) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187313_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.835
Sequence Type Exemplar sequence
Representative Public ID Y110A7A.19 NCBI
Target Description Y110A7A.19 /REP_DB=WormBase Gene ID /WP=CE23238 /TR=Q9N584 /GB=AAF60413.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059135 NCBI Caenorhabditis elegans Y110A7A.19 (Y110A7A.19) mRNA, complete cds. 11/11 None
SNAP00000029219 ENSEMBL cdna:SNAP chromosome:CEL140:I:5162701:5164740:-1 11/11 None
GENEFINDER00000029230 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5162701:5164884:-1 11/11 None
Y110A7A.19.1 ENSEMBL cdna:known chromosome:CEL140:I:5162602:5164887:-1 gene:Y110A7A.19 11/11 None
Y110A7A.19.2 ENSEMBL cdna:known chromosome:CEL140:I:5162602:5164889:-1 gene:Y110A7A.19 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_182461 2/11 Cross Hyb Matching Probes None
NM_075644 4/11 Cross Hyb Matching Probes None
SNAP00000014000 2/11 Cross Hyb Matching Probes None
SNAP00000003747 4/11 Cross Hyb Matching Probes None
GENEFINDER00000003762 4/11 Cross Hyb Matching Probes None
AC8.6 4/11 Cross Hyb Matching Probes None
Y108F1.3 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5162700-5164872(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A7A.19
Entrez Gene 172153 Entrez gene
SwissProt Q9N584 EMBL-EBI
WormBase CE23238 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60413 Hypothetical protein Y110A7A.19 [Caenorhabditis elegans] ref|NP_491536.1| Y110A7A.19 [Caenorhabditis elegans] 0.0
blast CAE56133 Hypothetical protein CBG23745 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187313_S_AT
ttatctgtcatcactagtttttcgaaaactcgctgcatcctccgatcgtcattggccact
gttacggagagtaatcatcgacggtattgcagctggacagatgaatggagttattggaga
agaaatgcgcaaacagttgtgtaatgtacaactacatacattgggaactagtgaacggga
gcaattcacatctcttgtccaaaaattggttgcagtttgggttgagttcagccaattcac
agaagagagaatgagaaggctccaaaggaaactgtcgcctagccagatctcagaatgtgc
tttgctcttgaccagaatcggagaacagcagaaagcttacgaactgttagatctactgct
tgatgaaactgcaagcagtggggacgaagcgactgtttatccacgtggacatgctaggcc
atgggcaatggcagaattgttcgaagatgctcttagaaaacgtgatacatatgctgcagc
gacttgcctgcaaattatgtcgttgaccgccaaccgtgcaaaacttgagcctctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCTGTCATCACTAGTTTTTCGA 497 679 1377 Antisense
TTTTTCGAAAACTCGCTGCATCCTC 585 673 1394 Antisense
TCATCGACGGTATTGCAGCTGGACA 189 621 1451 Antisense
ACGGGAGCAATTCACATCTCTTGTC 698 95 1551 Antisense
TCGCCTAGCCAGATCTCAGAATGTG 525 599 1651 Antisense
CAGAATGTGCTTTGCTCTTGACCAG 425 189 1667 Antisense
GACGAAGCGACTGTTTATCCACGTG 658 379 1759 Antisense
TATCCACGTGGACATGCTAGGCCAT 492 657 1774 Antisense
TACATATGCTGCAGCGACTTGCCTG 72 645 1842 Antisense
AAATTATGTCGTTGACCGCCAACCG 294 115 1868 Antisense
CAACCGTGCAAAACTTGAGCCTCTC 505 187 1887 Antisense
Sequence Source Affymetrix Proprietary Database