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[187312_at]

Description Y110A2AL.3 /REP_DB=WormBase Gene ID /WP=CE25191 /TR=Q9N498 /GB=AAF60402.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      6grp_highest_nonorm > 53      6grp_total > 60      4grp_total > 53      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 168.2
(3)
P 		94.7
(-0.4)
A 		83.1
(-1)
A 		39.9
(-3)
A 		128
B 156.6
(3)
P 		119.2
(1.5)
A 		101.2
(0.7)
A 		11.8
(-3)
A 		145
C 179.6
(3)
P 		106.7
(0.5)
A 		70.1
(-0.8)
A 		7.2
(-3)
A 		172
avr 168.1
(3) 		106.9
(0.5) 		84.8
(-0.4) 		19.6
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1401
1 2 3 4 5 6 range
A 721.4
(-2.4)
P 		654.7
(-2.7)
P 		1217.2
(-0.1)
P 		1899.8
(3)
P 		586.6
(-3)
P 		1044.4
(-0.9)
P 		1313
B 498.9
(-3)
P 		639.6
(-1.8)
P 		884.5
(0.4)
P 		1177.1
(3)
P 		750.5
(-0.8)
P 		602.7
(-2.1)
P 		678
C 701.1
(-2.2)
P 		576.4
(-3)
P 		1508.4
(3)
P 		1403.2
(2.3)
P 		862.6
(-1.2)
P 		910.9
(-0.8)
P 		932
avr 640.5
(-2.9) 		623.6
(-3) 		1203.4
(1) 		1493.4
(3) 		733.2
(-2.2) 		852.7
(-1.4) 		870
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 61.2
(3)
P 		20.6
(-1.4)
A 		21.7
(-1.3)
A 		5.8
(-3)
A 		55
B 49.9
(3)
P 		29.4
(0.4)
A 		23.5
(-0.3)
A 		2.5
(-3)
A 		47
C 59.5
(3)
P 		30.7
(0)
A 		24.4
(-0.6)
A 		1.2
(-3)
A 		58
avr 56.9
(3) 		26.9
(-0.4) 		23.2
(-0.8) 		3.2
(-3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 349
1 2 3 4 5 6 range
A 133
(-3)
P 		232.8
(-1.3)
P 		265.1
(-0.7)
P 		481.8
(3)
P 		177
(-2.2)
P 		254.3
(-0.9)
P 		349
B 173.6
(-3)
P 		212.9
(-1.3)
P 		214.8
(-1.2)
P 		311.8
(3)
P 		304.9
(2.7)
P 		224.8
(-0.8)
P 		138
C 259.9
(-0.6)
P 		175.9
(-3)
P 		383.9
(3)
P 		282.2
(0.1)
P 		279.1
(-0)
P 		304.9
(0.7)
P 		208
avr 188.8
(-3) 		207.2
(-2.3) 		287.9
(0.5) 		358.6
(3) 		253.7
(-0.7) 		261.3
(-0.4) 		170
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5415
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.3 NCBI
Target Description Y110A2AL.3 /REP_DB=WormBase Gene ID /WP=CE25191 /TR=Q9N498 /GB=AAF60402.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061986(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061986 NCBI Caenorhabditis elegans Y110A2AL.3 (Y110A2AL.3) mRNA, complete cds. 11/11 None
SNAP00000036287 ENSEMBL cdna:SNAP chromosome:CEL140:II:2867106:2867759:1 10/11 None
Y110A2AL.3 ENSEMBL cdna:known chromosome:CEL140:II:2867073:2867771:1 gene:Y110A2AL.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036300 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2867071-2867706(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AL.3
Entrez Gene 173633 Entrez gene
SwissProt Q9N498 EMBL-EBI
WormBase CE25191 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60402 Hypothetical protein Y110A2AL.3 [Caenorhabditis elegans] ref|NP_494387.1| Y110A2AL.3 [Caenorhabditis elegans] 4.0E-63
blast AAF60402 Hypothetical protein Y110A2AL.3 [Caenorhabditis elegans] ref|NP_494387.1| Y110A2AL.3 [Caenorhabditis elegans] 5.0E-23
blast AAF60397 Hypothetical protein Y110A2AL.9 [Caenorhabditis elegans] ref|NP_494386.1| Y110A2AL.9 [Caenorhabditis elegans] 5.0E-14
blast AAB37924 Hypothetical protein F08D12.3a [Caenorhabditis elegans] ref|NP_494363.1| F08D12.3a [Caenorhabditis elegans] 1.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 2.6E-17
Pfam IPR007026 EMBL-EBI CC domain 0.78
Pfam IPR007026 EMBL-EBI CC domain 2.6E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494387.1 1 12-31
Y110A2AL.3 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:187312_AT
tagatcgtttttggtagccgtctttgttttggcagttggcattgaagcctacttggactg
taaaggaccgatgtcgcctgcgatattccgtgcgtgtcctgtcggcgaggttctagtatt
ggaagacaactgctgcgacagcaaagatgtatttgacaccctcacagccacgtgtctcaa
aggatatggtcacaaaggagcctgggcacccgctattaacaacatgtgcccaactggctc
tcgcgtcacgaaaggttact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGATCGTTTTTGGTAGCCGTCTTT 301 651 51 Antisense
CCGTCTTTGTTTTGGCAGTTGGCAT 410 265 68 Antisense
GGCATTGAAGCCTACTTGGACTGTA 603 535 88 Antisense
TGTAAAGGACCGATGTCGCCTGCGA 60 545 109 Antisense
CGATGTCGCCTGCGATATTCCGTGC 548 249 119 Antisense
TGTCCTGTCGGCGAGGTTCTAGTAT 541 555 145 Antisense
TTGGAAGACAACTGCTGCGACAGCA 360 707 169 Antisense
AAGATGTATTTGACACCCTCACAGC 307 155 194 Antisense
GGGCACCCGCTATTAACAACATGTG 360 493 254 Antisense
AACAACATGTGCCCAACTGGCTCTC 181 135 268 Antisense
GGCTCTCGCGTCACGAAAGGTTACT 670 537 286 Antisense
Sequence Source Affymetrix Proprietary Database