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[187311_at]

Description F22B7.1 /REP_DB=WormBase Gene ID /WP=CE00153 /TR=SW:P34404 /GB=AAA65467.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 32.4
(0.3)
A 		47.8
(3)
A 		13.4
(-3)
A 		18.5
(-2.1)
A 		34
B 59.9
(3)
A 		12.2
(-3)
A 		12
(-3)
A 		12.9
(-2.9)
A 		48
C 24.5
(3)
A 		17.3
(0)
A 		10
(-3)
A 		16.6
(-0.3)
A 		15
avr 38.9
(3) 		25.8
(0.1) 		11.8
(-3) 		16
(-2.1) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 28.4
(1.3)
A 		37.2
(3)
A 		20.8
(-0.2)
A 		33.5
(2.3)
A 		6.7
(-3)
A 		13.4
(-1.7)
A 		31
B 19.7
(3)
A 		9.5
(-1)
A 		11.4
(-0.3)
A 		17.9
(2.3)
A 		18.8
(2.6)
A 		4.5
(-3)
A 		15
C 16.8
(-2.2)
A 		67.1
(3)
A 		13.6
(-2.5)
A 		30.3
(-0.8)
A 		11
(-2.8)
A 		9.1
(-3)
A 		58
avr 21.6
(-0.4) 		37.9
(3) 		15.3
(-1.7) 		27.2
(0.8) 		12.2
(-2.3) 		9
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.8
(3)
A 		10.4
(2.1)
A 		3.5
(-2.5)
A 		2.7
(-3)
A 		9
B 19.1
(3)
A 		3
(-2.9)
A 		2.8
(-3)
A 		2.8
(-3)
A 		16
C 8.1
(3)
A 		5
(-0.5)
A 		3.5
(-2.2)
A 		2.8
(-3)
A 		5
avr 13
(3) 		6.1
(-1.1) 		3.3
(-2.7) 		2.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.2
(-1.3)
A 		13.2
(3)
A 		4.5
(-1.7)
A 		8.5
(0.5)
A 		2
(-3)
A 		3.3
(-2.3)
A 		11
B 6.9
(2.2)
A 		3.2
(-1.5)
A 		2.8
(-1.9)
A 		4.7
(0)
A 		7.7
(3)
A 		1.7
(-3)
A 		6
C 6.2
(-1.9)
A 		20.5
(3)
A 		3.5
(-2.9)
A 		6.1
(-2)
A 		3.6
(-2.8)
A 		3.1
(-3)
A 		17
avr 6.1
(-0.9) 		12.3
(3) 		3.6
(-2.4) 		6.4
(-0.7) 		4.4
(-1.9) 		2.7
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187311_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7154
Sequence Type Exemplar sequence
Representative Public ID F22B7.1 NCBI
Target Description F22B7.1 /REP_DB=WormBase Gene ID /WP=CE00153 /TR=SW:P34404 /GB=AAA65467.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066509 NCBI Caenorhabditis elegans F22B7.1 (F22B7.1) mRNA, complete cds. 11/11 None
F22B7.1 ENSEMBL cdna:known chromosome:CEL140:III:8665248:8666782:1 gene:F22B7.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022047 6/11 Cross Hyb Matching Probes None
GENEFINDER00000022054 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8665242-8666777(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22B7.1
Entrez Gene 184811 Entrez gene
SwissProt P34404 EMBL-EBI
WormBase CE00153 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA65467 Hypothetical protein F22B7.1 [Caenorhabditis elegans] ref|NP_498910.1| F22B7.1 [Caenorhabditis elegans] sp|P34404|YLW1_CAEEL Hypothetical protein F22B7.1 in chromosome III 0.0
blast CAE75030 Hypothetical protein CBG22937 [Caenorhabditis briggsae] 1.0E-153
Sequence
Target Sequence 
>C. ELEGANS:187311_AT
tgaatggttatcacaatgcctccgtatacaacgcaatccgttcagtttggttgaaacaat
tacgtccatttctgccgctaattgatcaaatggccattcagcaaaaatcttctgaaactg
agaaaatgtcaatttgggcaagattatgggaaaatctgagtgtttggatgtatggaaaga
aaaaattaaacgaatgttatgcaatggagccaaaatgtgttcgacacgcattggaattgc
ttaattttgaacaaaggattgatttggatttagctgcttatgagaacaagtttgacagtg
ttgatggaattattagggaaagacttggcgaaaatcggaaaagcagtgaactcgacgaat
ggttgcacagaaatcgcccaccaaaagcgctacaagctattttagatgagcgaagtgaca
ttgaggaggaagctcttcaacgccttcgagataacggagttctgagctcactcaaacatt
attacaaagcagttatagagtcaagaagtcatgaagagcaagaggacattcgtcatttct
tcgacataatgaatgacacatttgctcgttgctttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATGGTTATCACAATGCCTCCGT 667 575 452 Antisense
AATGCCTCCGTATACAACGCAATCC 373 165 466 Antisense
AACGCAATCCGTTCAGTTTGGTTGA 379 143 481 Antisense
GAAACAATTACGTCCATTTCTGCCG 617 355 504 Antisense
TCCATTTCTGCCGCTAATTGATCAA 613 591 516 Antisense
AATGGTTGCACAGAAATCGCCCACC 668 161 809 Antisense
ATCGCCCACCAAAAGCGCTACAAGC 240 37 824 Antisense
GAGGAGGAAGCTCTTCAACGCCTTC 562 399 874 Antisense
GGAGTTCTGAGCTCACTCAAACATT 518 517 907 Antisense
AGGACATTCGTCATTTCTTCGACAT 422 55 974 Antisense
TGACACATTTGCTCGTTGCTTTGAC 75 573 1005 Antisense
Sequence Source Affymetrix Proprietary Database