[Home] | [Total List]

[187310_at]

Description Y116F11B.11 /REP_DB=WormBase Gene ID /WP=CE26045 /TR=Q9GRV6 /GB=CAC14393.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 18      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 7.8
(-3)
A 		16.3
(3)
A 		14.2
(1.5)
A 		8.8
(-2.3)
A 		9
B 12.4
(-2.6)
A 		25.6
(0.3)
P 		10.5
(-3)
A 		38.1
(3)
A 		28
C 13.7
(-1.1)
A 		4.1
(-2.7)
A 		2.2
(-3)
A 		39
(3)
P 		37
avr 11.3
(-2.3) 		15.3
(-1.1) 		9
(-3) 		28.6
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 39.1
(3)
A 		16.8
(-2)
A 		13.8
(-2.7)
A 		20.1
(-1.3)
A 		12.5
(-3)
A 		35.2
(2.1)
A 		27
B 1.7
(-3)
A 		25.7
(3)
A 		18.3
(1.2)
A 		3.2
(-2.6)
A 		4
(-2.4)
A 		11.1
(-0.7)
A 		24
C 23.6
(3)
A 		0.8
(-3)
A 		5.1
(-1.9)
A 		17
(1.3)
A 		2.3
(-2.6)
A 		17.5
(1.4)
A 		23
avr 21.5
(3) 		14.4
(0.2) 		12.4
(-0.6) 		13.4
(-0.2) 		6.3
(-3) 		21.3
(2.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 2.8
(0.7)
A 		3.5
(2.5)
A 		3.7
(3)
A 		1.3
(-3)
A 		2
B 4
(-1.3)
A 		6.3
(1.1)
P 		2.4
(-3)
A 		8.1
(3)
A 		6
C 4.5
(0.8)
A 		1.2
(-2.6)
A 		0.8
(-3)
A 		6.6
(3)
P 		6
avr 3.8
(0) 		3.7
(-0.2) 		2.3
(-3) 		5.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.2
(1.5)
A 		6
(0.2)
A 		3
(-3)
A 		5.1
(-0.8)
A 		3.8
(-2.1)
A 		8.6
(3)
A 		6
B 0.6
(-3)
A 		8.5
(3)
A 		4.4
(-0.1)
A 		0.9
(-2.8)
A 		1.6
(-2.2)
A 		4.1
(-0.3)
A 		8
C 8.7
(3)
A 		0.2
(-3)
A 		1.3
(-2.2)
A 		3.4
(-0.7)
A 		0.7
(-2.6)
A 		5.9
(1)
A 		9
avr 5.5
(2) 		4.9
(1.1) 		2.9
(-1.7) 		3.1
(-1.4) 		2
(-3) 		6.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14680
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.11 NCBI
Target Description Y116F11B.11 /REP_DB=WormBase Gene ID /WP=CE26045 /TR=Q9GRV6 /GB=CAC14393.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075448(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075448 NCBI Caenorhabditis elegans Y116F11B.11 (Y116F11B.11) mRNA, complete cds. 11/11 None
SNAP00000031767 ENSEMBL cdna:SNAP chromosome:CEL140:V:19877199:19895432:1 11/11 None
GENEFINDER00000031784 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19877199:19878023:1 11/11 None
Y116F11B.11 ENSEMBL cdna:known chromosome:CEL140:V:19876218:19878023:1 gene:Y116F11B.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19876217-19878023(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116F11B.11
Entrez Gene 191023 Entrez gene
SwissProt Q9GRV6 EMBL-EBI
WormBase CE26045 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14393 Hypothetical protein Y116F11B.11 [Caenorhabditis elegans] ref|NP_507849.1| Y116F11B.11 [Caenorhabditis elegans] 0.0
blast CAB05258 Hypothetical protein M162.7 [Caenorhabditis elegans] ref|NP_507838.1| M162.7 [Caenorhabditis elegans] 1.0E-117
blast CAC14393 Hypothetical protein Y116F11B.11 [Caenorhabditis elegans] ref|NP_507849.1| Y116F11B.11 [Caenorhabditis elegans] 1.0E-112
blast CAA16394 Hypothetical protein Y51A2B.6 [Caenorhabditis elegans] ref|NP_001024257.1| Y51A2B.6 [Caenorhabditis elegans] 1.0E-104
blast CAC14393 Hypothetical protein Y116F11B.11 [Caenorhabditis elegans] ref|NP_507849.1| Y116F11B.11 [Caenorhabditis elegans] 1.0E-104
blast CAA16394 Hypothetical protein Y51A2B.6 [Caenorhabditis elegans] ref|NP_001024257.1| Y51A2B.6 [Caenorhabditis elegans] 1.0E-80
blast CAB81982 Hypothetical protein Y116F11B.13 [Caenorhabditis elegans] ref|NP_507851.1| Y116F11B.13 [Caenorhabditis elegans] 4.0E-79
Sequence
Target Sequence 
>C. ELEGANS:187310_AT
attcagcagatacctccaatcgtttccgagtttttaaaagagcttgctacagtgaaagag
attccaaagaagatgagtgaaaagtcaaacgataagtctctaaagttgaattcgctgtca
tatagtcaatctagttcaattaagaatatagtttcttctctccgaaatgtctataatctc
ttggatatggaagccccgatcaatctgctgaagaatgtcgacaccattgttccagcaaag
ctcaaatctcaatggggagatcacaaggctgatatggattctttaaaagctaccatgaca
gaagcaaaagcttttgtagccgagctcgaaggttgcagagctaaaacattgctagaatac
acagatccattgaagagcttgtcaaagattcctgatgtcaaaatgaatgcaagtgagaaa
tccaaagtgattgaggagctgattaaacagaacagtaacgatgatttgatagctgcaaag
gagacactcgacaagattgctgccatggatcttcaattctcgagtgttcagtatcaagag
gctgcgttcaaggatcttcagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAGCAGATACCTCCAATCGTTT 395 11 949 Antisense
AAGTCTCTAAAGTTGAATTCGCTGT 114 159 1042 Antisense
GAATTCGCTGTCATATAGTCAATCT 204 325 1056 Antisense
AGAATATAGTTTCTTCTCTCCGAAA 436 75 1091 Antisense
CTCTCCGAAATGTCTATAATCTCTT 610 231 1106 Antisense
ATCTCTTGGATATGGAAGCCCCGAT 124 31 1124 Antisense
GACACCATTGTTCCAGCAAAGCTCA 673 367 1168 Antisense
AACATTGCTAGAATACACAGATCCA 565 137 1293 Antisense
CACAGATCCATTGAAGAGCTTGTCA 246 195 1308 Antisense
GAGTGTTCAGTATCAAGAGGCTGCG 364 401 1470 Antisense
GAGGCTGCGTTCAAGGATCTTCAGG 162 405 1486 Antisense
Sequence Source Affymetrix Proprietary Database