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[187309_at]

Description ZK1128.3 /REP_DB=WormBase Gene ID /WP=CE01685 /TR=SW:Q09358 /GB=CAA87422.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 8
(-2.5)
A 		23.7
(0.7)
A 		5.5
(-3)
A 		34.9
(3)
A 		29
B 6.1
(-3)
A 		6.2
(-2.9)
A 		16.5
(3)
A 		9.4
(-1.1)
A 		10
C 34.5
(3)
A 		4.8
(-3)
A 		4.9
(-3)
A 		26.2
(1.3)
A 		30
avr 16.2
(-0) 		11.6
(-1.9) 		9
(-3) 		23.5
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 5.7
(-2.8)
A 		6.3
(-2.8)
A 		2.4
(-3)
A 		13.4
(-2.4)
A 		75.5
(1)
A 		113.2
(3)
P 		111
B 5.5
(-3)
A 		15.7
(-2.5)
A 		32.1
(-1.8)
A 		5.1
(-3)
A 		97.2
(1.1)
P 		141.3
(3)
P 		136
C 2.3
(-3)
A 		27.2
(-2.1)
A 		33.5
(-1.9)
A 		60.7
(-0.9)
P 		86.6
(0)
P 		169.1
(3)
P 		167
avr 4.5
(-3) 		16.4
(-2.5) 		22.7
(-2.2) 		26.4
(-2) 		86.4
(0.6) 		141.2
(3) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.9
(-0.6)
A 		5.1
(3)
A 		1.4
(-3)
A 		5.1
(3)
A 		4
B 1.9
(-2)
A 		1.5
(-3)
A 		3.8
(3)
A 		2
(-1.7)
A 		2
C 11.4
(3)
A 		1.4
(-3)
A 		1.7
(-2.8)
A 		4.4
(-1.2)
A 		10
avr 5.4
(3) 		2.7
(-2.2) 		2.3
(-3) 		3.8
(-0.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 1
(-2.9)
A 		2.2
(-2.6)
A 		0.5
(-3)
A 		3.4
(-2.4)
A 		22.8
(1.9)
A 		27.6
(3)
P 		27
B 1.9
(-2.9)
A 		5.2
(-2.6)
A 		7.8
(-2.3)
A 		1.4
(-3)
A 		39.5
(1.5)
P 		52.7
(3)
P 		51
C 0.9
(-3)
A 		8.3
(-2.2)
A 		8.5
(-2.2)
A 		12.2
(-1.8)
P 		28
(-0.1)
P 		56.6
(3)
P 		56
avr 1.3
(-3) 		5.2
(-2.5) 		5.6
(-2.4) 		5.7
(-2.4) 		30.1
(0.9) 		45.6
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187309_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6817
Sequence Type Exemplar sequence
Representative Public ID ZK1128.3 NCBI
Target Description ZK1128.3 /REP_DB=WormBase Gene ID /WP=CE01685 /TR=SW:Q09358 /GB=CAA87422.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066847(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066847 NCBI Caenorhabditis elegans ZK1128.3 (ZK1128.3) mRNA, complete cds. 11/11 None
SNAP00000023587 ENSEMBL cdna:SNAP chromosome:CEL140:III:10116746:10118765:-1 11/11 None
GENEFINDER00000023598 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10116746:10118765:-1 11/11 None
ZK1128.3 ENSEMBL cdna:known chromosome:CEL140:III:10116855:10118765:-1 gene:ZK1128.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10116850-10118761(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1128.3
Entrez Gene 191527 Entrez gene
SwissProt Q09358 EMBL-EBI
WormBase CE01685 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87422 Hypothetical protein ZK1128.3 [Caenorhabditis elegans] ref|NP_499248.1| ZK1128.3 [Caenorhabditis elegans] sp|Q09358|YS03_CAEEL Hypothetical protein ZK1128.3 in chromosome III 1.0E-163
blast CAE65031 Hypothetical protein CBG09871 [Caenorhabditis briggsae] 8.0E-85
blast CAE65031 Hypothetical protein CBG09871 [Caenorhabditis briggsae] 6.0E-84
Sequence
Target Sequence 
>C. ELEGANS:187309_AT
tagctcgattttgcgggtttttccgtcgaaaactagaagctttgaaatggagagtgtaga
gaactttcaaagtcaccgaatgcgtcgtgtgtactggaatccatcaattccaaaagattc
gaattcaatgttccgcacgtggaatcattttctcgatggatgccttctttctctactcct
tgtgccactcaacaagcttactcaagttctagaatttttgcgtaaaatcaacgaaatgcg
aactgtgatcaacaatcgtataaccgtatcaatttgtttgagtcgtgtgatttgtgttga
agactatttgagtgctgtacagaaagtgatgaatacccgaactgttcaacttgatcatat
cccttccatggatcttccatctcttcactttgctcttgattttagccgttatcatattca
atctatgaatacaattttcacaggatcaacggaaatggataaattatcagatgagaattc
tagtcacgaattagttgaattttcgagctggtcatgtcacagggaagctcatatcaatat
ggaaccagaaaaatatcatcgaattctccattggttgtgggatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGCTCGATTTTGCGGGTTTTTCCG 425 649 477 Antisense
CAAAGTCACCGAATGCGTCGTGTGT 80 193 544 Antisense
GCGTCGTGTGTACTGGAATCCATCA 576 291 558 Antisense
TCCGCACGTGGAATCATTTTCTCGA 549 595 608 Antisense
TTTTCTCGATGGATGCCTTCTTTCT 26 677 624 Antisense
TGTGCCACTCAACAAGCTTACTCAA 505 555 657 Antisense
TGTTCAACTTGATCATATCCCTTCC 89 563 819 Antisense
TCATATCCCTTCCATGGATCTTCCA 107 621 831 Antisense
TCTCTTCACTTTGCTCTTGATTTTA 334 613 856 Antisense
GAATTTTCGAGCTGGTCATGTCACA 54 325 973 Antisense
GAATTCTCCATTGGTTGTGGGATCT 68 325 1037 Antisense
Sequence Source Affymetrix Proprietary Database