[Home] | [Total List]

[187307_at]

Description C02F5.1 /REP_DB=WormBase Gene ID /WP=CE02450 /TR=SW:P34278 /GB=AAA27916.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 67      6grp_total > 69      4grp_total > 60      6grp_cgc > 29      6grp_high1_sub > Da      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 192.9
(1.1)
P 		201.3
(1.4)
P 		247.2
(3)
M 		75.2
(-3)
A 		172
B 203.7
(1.9)
P 		220.9
(2.4)
P 		240.7
(3)
P 		43.1
(-3)
A 		198
C 213.4
(3)
P 		209.6
(2.7)
A 		200.1
(2.1)
P 		122.4
(-3)
A 		91
avr 203.3
(2) 		210.6
(2.2) 		229.3
(3) 		80.2
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 269.8
(0.2)
P 		216.8
(-1)
P 		135.9
(-3)
A 		235.2
(-0.6)
P 		236
(-0.6)
P 		383.2
(3)
P 		247
B 226.5
(-0.9)
P 		225.9
(-0.9)
P 		156.3
(-3)
A 		196.2
(-1.8)
P 		173.8
(-2.5)
P 		353.9
(3)
P 		198
C 192
(-1.7)
P 		219
(-0.5)
P 		161.8
(-3)
P 		196.2
(-1.5)
P 		220.7
(-0.5)
P 		300.9
(3)
P 		139
avr 229.4
(-0.6) 		220.6
(-0.9) 		151.3
(-3) 		209.2
(-1.2) 		210.2
(-1.2) 		346
(3) 		195
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 70.2
(3)
P 		43.7
(0.3)
P 		64.6
(2.4)
M 		11
(-3)
A 		59
B 65
(3)
P 		54.6
(1.9)
P 		55.8
(2)
P 		9.2
(-3)
A 		56
C 70.7
(3)
P 		60.3
(1.8)
A 		69.7
(2.9)
P 		20.6
(-3)
A 		50
avr 68.6
(3) 		52.9
(1.3) 		63.4
(2.4) 		13.6
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 49.7
(-1.1)
P 		77.1
(1.5)
P 		29.6
(-3)
A 		59.7
(-0.2)
P 		71.2
(0.9)
P 		93.3
(3)
P 		64
B 78.8
(-0.4)
P 		75.2
(-0.6)
P 		37.9
(-3)
A 		52
(-2.1)
P 		70.6
(-0.9)
P 		132
(3)
P 		94
C 71.2
(0.1)
P 		66.8
(-0.3)
P 		41.2
(-2.8)
P 		39.5
(-3)
P 		71.4
(0.1)
P 		100.7
(3)
P 		61
avr 66.6
(-0.5) 		73
(0) 		36.2
(-3) 		50.4
(-1.8) 		71.1
(-0.1) 		108.7
(3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7919
Sequence Type Exemplar sequence
Representative Public ID C02F5.1 NCBI
Target Description C02F5.1 /REP_DB=WormBase Gene ID /WP=CE02450 /TR=SW:P34278 /GB=AAA27916.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066410 NCBI Caenorhabditis elegans Kinetochore NuLl family member (knl-1) (knl-1) mRNA, complete cds. 11/11 None
SNAP00000034496 ENSEMBL cdna:SNAP chromosome:CEL140:III:8251837:8253859:1 11/11 None
GENEFINDER00000034511 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8251893:8257501:1 11/11 None
C02F5.1 ENSEMBL cdna:known chromosome:CEL140:III:8250552:8254238:1 gene:C02F5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8250547-8253855(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol knl-1
Ensembl C02F5.1
Entrez Gene 176164 Entrez gene
SwissProt P34278 EMBL-EBI
WormBase CE02450 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27916 Kinetochore null protein 1 [Caenorhabditis elegans] ref|NP_498811.1| Kinetochore NuLl family member (knl-1) [Caenorhabditis elegans] sp|P34278|YKK1_CAEEL Hypothetical protein C02F5.1 in chromosome III 0.0
blast S44798 F09G8.5 protein - Caenorhabditis elegans 0.0
blast S44603 C02F5.1 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.35
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.67
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.027
Sequence
Target Sequence 
>C. ELEGANS:187307_AT
tctgaagatccgtccactgaacaacatccagaagctctcaaatttcagcgtattgttgaa
aacgagaaaatgaaagtacaacacgagattgattctctgaattcaaccaatcaactttct
gctgagaaaattgatatgttgaagactaaggagctcttgaagtttagtcatgatgagcga
gaagcgattatgattgcaagaaaagacgcggaaatcaagtttttggagcttcgtctgaaa
tttgcactcgagaaaaaaattgaaagtgaccaggaaattgctgaactagaacaaggaaat
tcgaaaatggctgagcagctaagaggtctcgataagatggctgtcgttcaaaaagaacta
gaaaagctgagaagtcttcctccatcacgcgaagagagcgggaaaatccgaaaggagtgg
atggagatgaagcaatgggaattcgaccagaaaatgaaagcactccgaaatgtacgctca
aacatgattgcacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGAAGATCCGTCCACTGAACAAC 149 609 2422 Antisense
ACTGAACAACATCCAGAAGCTCTCA 150 99 2437 Antisense
GAAGCTCTCAAATTTCAGCGTATTG 166 343 2452 Antisense
AATTCAACCAATCAACTTTCTGCTG 642 175 2521 Antisense
GGAGCTTCGTCTGAAATTTGCACTC 229 521 2646 Antisense
GGCTGAGCAGCTAAGAGGTCTCGAT 254 539 2730 Antisense
GAGGTCTCGATAAGATGGCTGTCGT 49 403 2744 Antisense
AAGCTGAGAAGTCTTCCTCCATCAC 493 149 2785 Antisense
TTCCTCCATCACGCGAAGAGAGCGG 208 699 2798 Antisense
GAAAGCACTCCGAAATGTACGCTCA 466 359 2877 Antisense
GTACGCTCAAACATGATTGCACTTC 92 459 2893 Antisense
Sequence Source Affymetrix Proprietary Database