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[187306_at]

Description F37A4.3 /REP_DB=WormBase Gene ID /WP=CE00709 /TR=SW:P41881 /GB=AAA50631.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 50      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 8.9
(-3)
A 		156
(3)
A 		105.9
(1)
A 		36.6
(-1.9)
A 		147
B 11.9
(-2.9)
A 		112.9
(2.6)
P 		119.5
(3)
A 		10.4
(-3)
A 		109
C 9.3
(-2.9)
A 		176
(3)
A 		135.2
(1.5)
P 		7.8
(-3)
A 		168
avr 10
(-3) 		148.3
(3) 		120.2
(1.8) 		18.3
(-2.6) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 15.3
(-3)
A 		112.1
(-1.3)
A 		217.2
(0.6)
P 		353.9
(3)
M 		131.5
(-0.9)
A 		28.1
(-2.8)
A 		339
B 21.4
(-2.6)
A 		116.8
(-0.3)
A 		197.2
(1.7)
P 		247.8
(3)
P 		181.4
(1.3)
P 		6.6
(-3)
A 		241
C 19.6
(-2.8)
A 		117.7
(-1)
A 		107.3
(-1.2)
A 		329.2
(3)
A 		97.9
(-1.4)
A 		11.6
(-3)
A 		318
avr 18.8
(-2.9) 		115.5
(-1) 		173.9
(0.2) 		310.3
(3) 		136.9
(-0.5) 		15.4
(-3) 		295
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 3.2
(-3)
A 		33.9
(3)
A 		27.7
(1.8)
A 		5.4
(-2.6)
A 		31
B 3.8
(-2.6)
A 		27.9
(3)
P 		27.7
(3)
A 		2.2
(-3)
A 		26
C 3.1
(-2.8)
A 		50.6
(3)
A 		47.1
(2.6)
P 		1.3
(-3)
A 		49
avr 3.4
(-2.9) 		37.5
(3) 		34.2
(2.4) 		3
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 2.8
(-3)
A 		39.9
(-0.4)
A 		47.3
(0.1)
P 		89.8
(3)
M 		39.7
(-0.5)
A 		6.8
(-2.7)
A 		87
B 7.5
(-2.6)
A 		38.9
(0.1)
A 		47.9
(0.8)
P 		65.6
(2.3)
P 		73.7
(3)
P 		2.5
(-3)
A 		71
C 7.3
(-2.7)
A 		35.9
(0.1)
A 		27.3
(-0.7)
A 		66.2
(3)
A 		31.7
(-0.3)
A 		3.9
(-3)
A 		62
avr 5.9
(-2.9) 		38.2
(-0.1) 		40.8
(0.1) 		73.9
(3) 		48.4
(0.8) 		4.4
(-3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187306_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7245
Sequence Type Exemplar sequence
Representative Public ID F37A4.3 NCBI
Target Description F37A4.3 /REP_DB=WormBase Gene ID /WP=CE00709 /TR=SW:P41881 /GB=AAA50631.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066071 NCBI Caenorhabditis elegans F37A4.3 (F37A4.3) mRNA, complete cds. 11/11 None
F37A4.3 ENSEMBL cdna:known chromosome:CEL140:III:6718718:6719677:1 gene:F37A4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044183 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6718716-6719676(+) 66.67 100.0
Public Domain and Genome References
Gene Title
Ensembl F37A4.3
Entrez Gene 185403 Entrez gene
SwissProt P41881 EMBL-EBI
WormBase CE00709 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50631 Hypothetical protein F37A4.3 [Caenorhabditis elegans] ref|NP_498472.1| F37A4.3 [Caenorhabditis elegans] sp|P41881|YPT3_CAEEL Hypothetical protein F37A4.3 in chromosome III 1.0E-123
blast CAE70117 Hypothetical protein CBG16569 [Caenorhabditis briggsae] 9.0E-69
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498472.1 1 198-220
F37A4.3 1 198-220
Sequence
Target Sequence 
>C. ELEGANS:187306_AT
aactttacaatctacgggtcctgagatgacaaatttatgtaaaaagagctggtgtgacaa
ggttgatgattattttgtagtcccacatcattatgtcaattggcaaaaaccaaccgagca
atggctaattcatcatttttcaaaaatgattcttcatacacgacgccttccccaacaagc
tcaatggtacatgtttgcatttgataataattattttttcgttgaacgtctcataaaaga
actgtcgaaattcgattcgcatcttccgatatacacaattctccgggattttcacgctga
tgtaaatttcaattactgtattattatgaggacgcaacaaaattcccctttcttttcaaa
tagacgtggaaacgcgctccatggcgatttgaaaacgctccacccccaaacagtgggtct
cgttaggtatttgccggaaaacccgcaaattcaaatgttttcaattagttttgctgtttt
cgtctactttcaagcatttttcgtccttttttggcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTTACAATCTACGGGTCCTGAG 262 137 150 Antisense
GATTATTTTGTAGTCCCACATCATT 496 429 217 Antisense
AATGATTCTTCATACACGACGCCTT 146 165 294 Antisense
CCTTCCCCAACAAGCTCAATGGTAC 539 269 315 Antisense
GAAATTCGATTCGCATCTTCCGATA 421 363 396 Antisense
ATCTTCCGATATACACAATTCTCCG 367 31 410 Antisense
TTCTCCGGGATTTTCACGCTGATGT 621 693 428 Antisense
TCCCCTTTCTTTTCAAATAGACGTG 695 595 493 Antisense
AACGCGCTCCATGGCGATTTGAAAA 432 145 520 Antisense
TTTGCTGTTTTCGTCTACTTTCAAG 127 669 619 Antisense
AGCATTTTTCGTCCTTTTTTGGCAT 315 75 642 Antisense
Sequence Source Affymetrix Proprietary Database