[Home] | [Total List]

[187305_at]

Description C02F5.2 /REP_DB=WormBase Gene ID /WP=CE00038 /TR=SW:P34279 /GB=AAA27917.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.4
(3)
A 		9.1
(-0.3)
A 		3.2
(-3)
A 		6.9
(-1.3)
A 		13
B 3.7
(1.5)
A 		0.9
(-3)
A 		4.1
(2.2)
A 		4.6
(3)
A 		4
C 1
(-3)
A 		2.2
(3)
A 		1.2
(-2)
A 		1
(-3)
A 		1
avr 7
(3) 		4.1
(-1.1) 		2.8
(-3) 		4.2
(-1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.6
(-2)
A 		2.1
(-2.6)
A 		17.4
(3)
A 		0.9
(-3)
A 		7.6
(-0.6)
A 		5
(-1.5)
A 		17
B 5.1
(3)
A 		2.7
(-0.5)
A 		4.9
(2.7)
A 		3
(-0.1)
A 		1
(-3)
A 		2.3
(-1.1)
A 		4
C 1.2
(-2.9)
A 		3.5
(-2.2)
A 		21.5
(3)
A 		3.2
(-2.3)
A 		0.8
(-3)
A 		15.4
(1.2)
A 		21
avr 3.3
(-2.6) 		2.8
(-2.8) 		14.6
(3) 		2.4
(-3) 		3.1
(-2.7) 		7.6
(-0.4) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6
(3)
A 		2
(-1.6)
A 		0.8
(-3)
A 		1
(-2.8)
A 		5
B 1.2
(3)
A 		0.2
(-3)
A 		1
(1.8)
A 		1
(1.8)
A 		1
C 0.3
(-1.5)
A 		0.6
(3)
A 		0.4
(0)
A 		0.2
(-3)
A 		0
avr 2.5
(3) 		0.9
(-2.3) 		0.7
(-3) 		0.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.7
(-2.2)
A 		0.8
(-2)
A 		3.8
(3)
A 		0.2
(-3)
A 		2.3
(0.5)
A 		1.2
(-1.3)
A 		4
B 1.8
(3)
A 		0.9
(-0.9)
A 		1.2
(0.4)
A 		0.8
(-1.3)
A 		0.4
(-3)
A 		0.9
(-0.9)
A 		1
C 0.5
(-2.8)
A 		1.1
(-2.1)
A 		5.5
(3)
A 		0.6
(-2.7)
A 		0.3
(-3)
A 		5.2
(2.7)
A 		5
avr 1
(-2) 		0.9
(-2.2) 		3.5
(3) 		0.5
(-3) 		1
(-2) 		2.4
(0.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187305_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7612
Sequence Type Exemplar sequence
Representative Public ID C02F5.2 NCBI
Target Description C02F5.2 /REP_DB=WormBase Gene ID /WP=CE00038 /TR=SW:P34279 /GB=AAA27917.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066409(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066409 NCBI Caenorhabditis elegans C02F5.2 (C02F5.2) mRNA, complete cds. 11/11 None
SNAP00000031512 ENSEMBL cdna:SNAP chromosome:CEL140:III:8249553:8250078:1 11/11 None
GENEFINDER00000031528 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8249553:8249903:1 11/11 None
C02F5.2 ENSEMBL cdna:known chromosome:CEL140:III:8249553:8249903:1 gene:C02F5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8249548-8249899(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C02F5.2
Entrez Gene 182121 Entrez gene
SwissProt P34279 EMBL-EBI
WormBase CE00038 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE56928 Hypothetical protein CBG24773 [Caenorhabditis briggsae] 9.0E-50
blast AAA27917 Hypothetical protein C02F5.2 [Caenorhabditis elegans] ref|NP_498810.1| C02F5.2 [Caenorhabditis elegans] sp|P34279|YKK2_CAEEL Hypothetical protein C02F5.2 in chromosome III 1.0E-42
blast AAA27917 Hypothetical protein C02F5.2 [Caenorhabditis elegans] ref|NP_498810.1| C02F5.2 [Caenorhabditis elegans] sp|P34279|YKK2_CAEEL Hypothetical protein C02F5.2 in chromosome III 3.0E-42
blast CAE56928 Hypothetical protein CBG24773 [Caenorhabditis briggsae] 1.0E-27
blast AAA27925 Hypothetical protein C02F5.10 [Caenorhabditis elegans] ref|NP_498809.1| C02F5.10 [Caenorhabditis elegans] sp|P34287|YKK0_CAEEL Hypothetical protein C02F5.10 in chromosome III 1.0E-10
blast AAA27925 Hypothetical protein C02F5.10 [Caenorhabditis elegans] ref|NP_498809.1| C02F5.10 [Caenorhabditis elegans] sp|P34287|YKK0_CAEEL Hypothetical protein C02F5.10 in chromosome III 1.0E-9
Sequence
Target Sequence 
>C. ELEGANS:187305_AT
aaatcctagtaaatctgatacttctataagccttccaccaagctcaactggagaagcgct
tcaaaattatacagaatcggaatggaacgcatcagatgatccgtattctgcagaacttct
caatgtgaaaaagaagccgaatcgagttaatgtgttctcagcaactga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCCTAGTAAATCTGATACTTCT 37 119 36 Antisense
TGATACTTCTATAAGCCTTCCACCA 367 565 51 Antisense
CCTTCCACCAAGCTCAACTGGAGAA 110 269 66 Antisense
AGCTCAACTGGAGAAGCGCTTCAAA 155 79 76 Antisense
GAGAAGCGCTTCAAAATTATACAGA 24 393 86 Antisense
ACAGAATCGGAATGGAACGCATCAG 9 77 106 Antisense
GGAACGCATCAGATGATCCGTATTC 218 531 119 Antisense
GATCCGTATTCTGCAGAACTTCTCA 227 417 133 Antisense
ATTCTGCAGAACTTCTCAATGTGAA 652 9 140 Antisense
GAAGCCGAATCGAGTTAATGTGTTC 96 345 168 Antisense
GAGTTAATGTGTTCTCAGCAACTGA 710 397 179 Antisense
Sequence Source Affymetrix Proprietary Database