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[187304_s_at]

Description C37C3.8 /REP_DB=WormBase Gene ID /WP=CE24833 /TR=SW:Q22915 /GB=AAC25863.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 64      6grp_total > 95      4grp_total > 12      6grp_highest_sub > In      6grp_high1_sub > 04      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 843
1 2 3 4 range
A 588.9
(-1.6)
P 		449.4
(-2.8)
P 		432.5
(-3)
P 		1089.6
(3)
P 		657
B 586.4
(-0.5)
P 		437.8
(-1.6)
P 		246.6
(-3)
P 		1067.5
(3)
P 		821
C 690.6
(-0.1)
P 		432.9
(-3)
P 		435.2
(-3)
P 		966.9
(3)
P 		534
avr 622
(-0.8) 		440
(-2.4) 		371.4
(-3) 		1041.3
(3) 		670

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 550
1 2 3 4 5 6 range
A 763.2
(-1.5)
P 		640.3
(-3)
P 		722.1
(-2)
P 		982.3
(1.2)
P 		973.2
(1.1)
P 		1129.1
(3)
P 		489
B 708.6
(-0.6)
P 		668.1
(-1.3)
P 		579
(-3)
P 		792
(1)
P 		855.5
(2.2)
P 		896.5
(3)
P 		318
C 714.6
(-3)
P 		718.5
(-2.9)
P 		819.9
(-0.4)
P 		961.4
(3)
P 		886.6
(1.2)
P 		779
(-1.4)
P 		247
avr 728.8
(-1.8) 		675.6
(-3) 		707
(-2.3) 		911.9
(2.5) 		905.1
(2.3) 		934.9
(3) 		259
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 172
1 2 3 4 range
A 214.4
(3)
P 		97.6
(-3)
P 		113.1
(-2.2)
P 		159.5
(0.2)
P 		117
B 187
(1.6)
P 		108.1
(-1.2)
P 		57.1
(-3)
P 		227.5
(3)
P 		170
C 228.6
(3)
P 		124.5
(-3)
P 		151.7
(-1.4)
P 		163
(-0.8)
P 		104
avr 210
(3) 		110.1
(-2.8) 		107.3
(-3) 		183.3
(1.4) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 207
1 2 3 4 5 6 range
A 140.7
(-3)
P 		227.7
(0.4)
P 		157.3
(-2.3)
P 		249.1
(1.3)
P 		293.7
(3)
P 		274.9
(2.3)
P 		153
B 246.6
(0.1)
P 		222.4
(-0.6)
P 		140.6
(-3)
P 		209.8
(-1)
P 		347.6
(3)
P 		334.3
(2.6)
P 		207
C 264.9
(1.6)
P 		219.2
(-1.3)
P 		208.7
(-2)
P 		193.3
(-3)
P 		286.9
(3)
P 		260.8
(1.3)
P 		94
avr 217.4
(-0.9) 		223.1
(-0.7) 		168.9
(-3) 		217.4
(-0.9) 		309.4
(3) 		290
(2.2) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187304_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11784
Sequence Type Exemplar sequence
Representative Public ID C37C3.8 NCBI
Target Description C37C3.8 /REP_DB=WormBase Gene ID /WP=CE24833 /TR=SW:Q22915 /GB=AAC25863.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171486(11), NM_171487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171486 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-253) (tag-253) mRNA, complete cds. 11/11 None
NM_171487 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-253) (tag-253) mRNA, complete cds. 11/11 None
SNAP00000006078 ENSEMBL cdna:SNAP chromosome:CEL140:V:7847211:7848319:-1 11/11 None
GENEFINDER00000006087 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7847211:7850261:-1 11/11 None
C37C3.8a.4 ENSEMBL cdna:known chromosome:CEL140:V:7846936:7849756:-1 gene:C37C3.8 11/11 None
C37C3.8a.3 ENSEMBL cdna:known chromosome:CEL140:V:7846936:7849756:-1 gene:C37C3.8 11/11 None
C37C3.8a.2 ENSEMBL cdna:known chromosome:CEL140:V:7846936:7848761:-1 gene:C37C3.8 11/11 None
C37C3.8a.1 ENSEMBL cdna:known chromosome:CEL140:V:7846936:7850035:-1 gene:C37C3.8 11/11 None
C37C3.8b ENSEMBL cdna:known chromosome:CEL140:V:7847211:7849128:-1 gene:C37C3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7847211-7850223(-) 100.0 100.0
Public Domain and Genome References
Ensembl C37C3.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM29667 Hypothetical protein C37C3.8b [Caenorhabditis elegans] ref|NP_741571.1| Temporarily Assigned Gene name family member (tag-253) [Caenorhabditis elegans] sp|Q22915|YC4P_CAEEL Hypothetical UPF0103 protein C37C3.8 in chromosome V 0.0
blast AAM29667 Hypothetical protein C37C3.8b [Caenorhabditis elegans] ref|NP_741571.1| Temporarily Assigned Gene name family member (tag-253) [Caenorhabditis elegans] sp|Q22915|YC4P_CAEEL Hypothetical UPF0103 protein C37C3.8 in chromosome V 1.0E-169
blast CAE73168 Hypothetical protein CBG20564 [Caenorhabditis briggsae] 1.0E-168
blast AAM29667 Hypothetical protein C37C3.8b [Caenorhabditis elegans] ref|NP_741571.1| Temporarily Assigned Gene name family member (tag-253) [Caenorhabditis elegans] sp|Q22915|YC4P_CAEEL Hypothetical UPF0103 protein C37C3.8 in chromosome V 1.0E-166
blast AAC25863 Hypothetical protein C37C3.8a [Caenorhabditis elegans] ref|NP_741570.2| Temporarily Assigned Gene name family member (tag-253) [Caenorhabditis elegans] pir||T34398 hypothetical protein C37C3.8 - Caenorhabditis elegans 1.0E-166
Protein Domains
Database ID Description E-Value
Pfam IPR002737 EMBL-EBI Protein of unknown function DUF52 1.0E-126
Pfam IPR002737 EMBL-EBI Protein of unknown function DUF52 1.0E-126
Pfam IPR002737 EMBL-EBI Protein of unknown function DUF52 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187304_S_AT
tccactcggcgacttgatcgttgatcacaaaattaacgaggagcttcgtgccactcgtca
tttcgatttgatggatcgccgagatgaagaatcagagcatagtattgaaatgcaactccc
atttattgcaaaggttatgggttcaaaacgttacaccattgttccggtacttgttggatc
tttaccaggatctaggcagcaaacgtatggaaatatttttgctcattacatggaggatcc
aagaaacttgtttgtgatctcttcggacttttgccattggggagaacgcttcagcttttc
tccgtacgatcgtcatagttctattccgatttatgagcagataaccaatatggataagca
gggaatgagcgcaattgagacgcttaatccggcagcttttaatgactacctcaaaaagac
ccagaacacgatttgtgggcgtaatccgatattgataatgctgcaagcagccgaacattt
ccggatcagtaacaatcacactcacgagtttagattcttgcattacacacaatcaaacaa
ggttcgatcatcggtcgattcttctgtttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTCGGCGACTTGATCGTTGAT 344 589 585 Antisense
TTAACGAGGAGCTTCGTGCCACTCG 604 681 617 Antisense
GTGCCACTCGTCATTTCGATTTGAT 134 479 632 Antisense
GTTACACCATTGTTCCGGTACTTGT 561 445 734 Antisense
TTGTGATCTCTTCGGACTTTTGCCA 138 709 836 Antisense
GGAGAACGCTTCAGCTTTTCTCCGT 428 519 865 Antisense
CCGTACGATCGTCATAGTTCTATTC 433 263 886 Antisense
GCGCAATTGAGACGCTTAATCCGGC 73 287 953 Antisense
TCCGGCAGCTTTTAATGACTACCTC 590 593 972 Antisense
GCAAGCAGCCGAACATTTCCGGATC 340 319 1047 Antisense
GATCATCGGTCGATTCTTCTGTTTC 704 419 1130 Antisense
Sequence Source Affymetrix Proprietary Database