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[187303_at] transposase

Description C03B1.4 /REP_DB=WormBase Gene ID /WP=CE03906 /TR=SW:Q11111 /GB=AAA81742.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 8.9
(-2.3)
A 		21.7
(3)
A 		7.3
(-3)
A 		7.9
(-2.8)
A 		14
B 4.7
(-3)
A 		15.3
(3)
A 		12.3
(1.3)
A 		6.5
(-2)
A 		11
C 3.8
(-3)
A 		11.2
(-2.1)
A 		7.2
(-2.6)
A 		54.2
(3)
A 		50
avr 5.8
(-3) 		16.1
(0.6) 		8.9
(-1.9) 		22.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 12.3
(0.8)
A 		12.9
(1)
A 		4.3
(-3)
A 		6.3
(-2.1)
A 		17.1
(3)
A 		11.9
(0.6)
A 		13
B 3.7
(-2.5)
A 		14.1
(3)
A 		4.1
(-2.3)
A 		6.7
(-0.9)
A 		5.4
(-1.6)
A 		2.8
(-3)
A 		11
C 21
(-0.6)
A 		48.3
(3)
A 		15.7
(-1.3)
A 		23
(-0.3)
A 		6.9
(-2.4)
A 		2.4
(-3)
A 		46
avr 12.3
(-1) 		25.1
(3) 		8
(-2.3) 		12
(-1.1) 		9.8
(-1.7) 		5.7
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.3
(0.6)
A 		4.7
(3)
A 		1.9
(-1.8)
A 		1.2
(-3)
A 		4
B 1.5
(-2.8)
A 		3.8
(3)
A 		2.8
(0.5)
A 		1.4
(-3)
A 		2
C 1.2
(-3)
A 		3.2
(-1.5)
A 		2.5
(-2)
A 		9.1
(3)
A 		8
avr 2
(-3) 		3.9
(3) 		2.4
(-1.7) 		3.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.3
(-1)
A 		4.6
(2.2)
A 		0.9
(-3)
A 		1.6
(-2)
A 		5.2
(3)
A 		2.9
(-0.2)
A 		4
B 1.3
(-2.5)
A 		4.7
(3)
A 		1
(-3)
A 		1.8
(-1.7)
A 		2.2
(-1.1)
A 		1
(-3)
A 		4
C 7.8
(0)
A 		14.7
(3)
A 		4
(-1.6)
A 		4.6
(-1.4)
A 		2.2
(-2.4)
A 		0.8
(-3)
A 		14
avr 3.8
(-0.9) 		8
(3) 		2
(-2.6) 		2.7
(-2) 		3.2
(-1.5) 		1.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17175
Sequence Type Exemplar sequence
Representative Public ID C03B1.4 NCBI
Target Description C03B1.4 /REP_DB=WormBase Gene ID /WP=CE03906 /TR=SW:Q11111 /GB=AAA81742.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076667(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076667 NCBI Caenorhabditis elegans C03B1.4 (transposase) mRNA, complete cds. 11/11 None
SNAP00000009786 ENSEMBL cdna:SNAP chromosome:CEL140:X:6364452:6365673:1 11/11 None
GENEFINDER00000009800 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6364452:6365673:1 11/11 None
C03B1.4 ENSEMBL cdna:known chromosome:CEL140:X:6364452:6365673:1 gene:C03B1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6364451-6365673(+) 100.0 100.0
Public Domain and Genome References
Gene Title transposase
Ensembl C03B1.4
Entrez Gene 182147 Entrez gene
SwissProt Q11111 EMBL-EBI
WormBase CE03906 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81742 Hypothetical protein C03B1.4 [Caenorhabditis elegans] ref|NP_509068.1| C03B1.4 [Caenorhabditis elegans] sp|Q11111|YX04_CAEEL Hypothetical protein C03B1.4 in chromosome X 1.0E-146
blast CAE61247 Hypothetical protein CBG05050 [Caenorhabditis briggsae] 1.0E-24
Sequence
Target Sequence 
>C. ELEGANS:187303_AT
gtatcacgtaccactggactttctggaccggagacgacgagaaaaaaattgtgtcctggg
tgaattatagcccgaagccaatcgctattcaaacgttgaaaaataaaagttcccatcgaa
agaaagacattacctacagccagtatattgatatcaaaggcaccgttgagccaggatttg
tcgtaccaaaaaactactttgtgccacatcctgacccagacctccaaccagaggatgccg
ttgttcactaccagattttgaccagcatgaaagattccatcgaggatatgcctcatttga
tgtcggaaacaaagctcgattgcgaaatgtacataaaggaccgctttgaggagttgctcc
aggagtaccaagagagcaagaacacatactacttggcccgtgccgacttttaccgcaagc
tgaaattcgagcacttggatctggatcatcagcttcttatctccgcagccaatcgagatt
ggattgacggatatttcttggagaaggagcttcgcgcttcatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCACGTACCACTGGACTTTCTG 100 453 221 Antisense
GACTTTCTGGACCGGAGACGACGAG 129 369 237 Antisense
GCCCGAAGCCAATCGCTATTCAAAC 545 285 290 Antisense
GTTGAGCCAGGATTTGTCGTACCAA 81 439 385 Antisense
AAACTACTTTGTGCCACATCCTGAC 131 129 411 Antisense
AACCAGAGGATGCCGTTGTTCACTA 443 147 446 Antisense
AGGACCGCTTTGAGGAGTTGCTCCA 86 55 557 Antisense
AAGAACACATACTACTTGGCCCGTG 614 151 598 Antisense
TCTGGATCATCAGCTTCTTATCTCC 628 607 660 Antisense
TTCTTATCTCCGCAGCCAATCGAGA 671 689 674 Antisense
GGAGAAGGAGCTTCGCGCTTCATAT 56 519 720 Antisense
Sequence Source Affymetrix Proprietary Database