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[187302_at]

Description F37A4.6 /REP_DB=WormBase Gene ID /WP=CE00706 /TR=SW:P41884 /GB=AAA50634.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 46      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 151.5
(3)
P 		37.1
(-2.9)
A 		35.9
(-2.9)
A 		34.2
(-3)
A 		117
B 117.2
(3)
P 		62.3
(0.1)
A 		4
(-3)
A 		35.1
(-1.4)
A 		113
C 123.9
(3)
P 		79.6
(0.3)
A 		27.2
(-3)
A 		57
(-1.2)
A 		97
avr 130.9
(3) 		59.7
(-0.9) 		22.4
(-3) 		42.1
(-1.9) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 23.5
(-0.9)
A 		63.1
(3)
P 		51
(1.8)
A 		32.1
(-0)
A 		2
(-3)
A 		50
(1.7)
A 		61
B 60.5
(1.7)
P 		76.8
(3)
A 		75.3
(2.9)
M 		35.7
(-0.4)
A 		3.7
(-3)
A 		67.6
(2.2)
P 		73
C 36.7
(-0.5)
A 		82.8
(3)
P 		55.6
(0.9)
A 		6.1
(-2.8)
A 		3.5
(-3)
A 		66.4
(1.8)
M 		79
avr 40.2
(0.1) 		74.2
(3) 		60.6
(1.9) 		24.6
(-1.2) 		3.1
(-3) 		61.3
(1.9) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 55.2
(3)
P 		8.1
(-2.6)
A 		9.4
(-2.5)
A 		5
(-3)
A 		50
B 37.4
(3)
P 		15.4
(-0.6)
A 		0.9
(-3)
A 		7.5
(-1.9)
A 		37
C 41
(3)
P 		22.9
(-0.4)
A 		9.5
(-3)
A 		9.6
(-3)
A 		32
avr 44.5
(3) 		15.5
(-1.6) 		6.6
(-3) 		7.4
(-2.9) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.3
(-2)
A 		22.4
(3)
P 		11.1
(-0.1)
A 		8.1
(-0.9)
A 		0.6
(-3)
A 		12.2
(0.2)
A 		22
B 21.1
(1.9)
P 		25.6
(3)
A 		18.3
(1.2)
M 		9.5
(-1)
A 		1.5
(-3)
A 		25.2
(2.9)
P 		24
C 13.6
(0.1)
A 		25.3
(3)
P 		14.2
(0.2)
A 		1.2
(-3)
A 		1.1
(-3)
A 		22.2
(2.2)
M 		24
avr 13
(0.1) 		24.4
(3) 		14.5
(0.5) 		6.3
(-1.7) 		1.1
(-3) 		19.9
(1.8) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187302_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6940
Sequence Type Exemplar sequence
Representative Public ID F37A4.6 NCBI
Target Description F37A4.6 /REP_DB=WormBase Gene ID /WP=CE00706 /TR=SW:P41884 /GB=AAA50634.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066068(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066068 NCBI Caenorhabditis elegans F37A4.6 (F37A4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000044177 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6705310:6707276:1 11/11 None
SNAP00000044169 ENSEMBL cdna:SNAP chromosome:CEL140:III:6706344:6709026:1 11/11 None
F37A4.6 ENSEMBL cdna:known chromosome:CEL140:III:6705750:6707133:1 gene:F37A4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6705748-6707132(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F37A4.6
Entrez Gene 185405 Entrez gene
SwissProt P41884 EMBL-EBI
WormBase CE00706 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50634 Hypothetical protein F37A4.6 [Caenorhabditis elegans] ref|NP_498469.1| F37A4.6 [Caenorhabditis elegans] sp|P41884|YPT6_CAEEL Hypothetical protein F37A4.6 in chromosome III 0.0
blast CAE70122 Hypothetical protein CBG16575 [Caenorhabditis briggsae] 1.0E-144
blast CAE70122 Hypothetical protein CBG16575 [Caenorhabditis briggsae] 1.0E-143
blast AAA50634 Hypothetical protein F37A4.6 [Caenorhabditis elegans] ref|NP_498469.1| F37A4.6 [Caenorhabditis elegans] sp|P41884|YPT6_CAEEL Hypothetical protein F37A4.6 in chromosome III 1.0E-107
blast CAE70122 Hypothetical protein CBG16575 [Caenorhabditis briggsae] 6.0E-75
Sequence
Target Sequence 
>C. ELEGANS:187302_AT
agttcgatgggcgccagtgatgctgaagaaatagacataaaaagccatatgaaaccactc
tcagttaaaattccagccaacatattcaaaacaccaacgctagatattcccgttgacgat
gacgcagaaattgacgctgatgtgtttcctcttccaccacccactccagttaatttaaag
catggattattctcgattccgtcgggccgtaattctgaatctgctcgatcacgtcaaact
aaaagaagtccgtttggatcagtaactagtcgtacatcatctcttgatcgtcgcatgagc
ttgagctgtttggaagacacgtctaattatcaaaagacgcaatatttggttttccctttg
agaacctcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCGATGGGCGCCAGTGATGCTG 598 63 700 Antisense
ACCACTCTCAGTTAAAATTCCAGCC 428 85 753 Antisense
CAAAACACCAACGCTAGATATTCCC 347 189 786 Antisense
TAGATATTCCCGTTGACGATGACGC 534 651 800 Antisense
AATTGACGCTGATGTGTTTCCTCTT 699 177 828 Antisense
GCATGGATTATTCTCGATTCCGTCG 414 307 879 Antisense
GATTCCGTCGGGCCGTAATTCTGAA 515 431 894 Antisense
TTCTGAATCTGCTCGATCACGTCAA 297 693 912 Antisense
GTCGTACATCATCTCTTGATCGTCG 334 473 968 Antisense
TGATCGTCGCATGAGCTTGAGCTGT 600 565 984 Antisense
TGGTTTTCCCTTTGAGAACCTCAAG 340 543 1046 Antisense
Sequence Source Affymetrix Proprietary Database