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[187301_s_at]

Description Y116F11B.14 /REP_DB=WormBase Gene ID /WP=CE25729 /TR=Q9NEJ3 /GB=CAB81984.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 12      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 3.3
(-3)
A 		8.7
(-2.5)
A 		3.8
(-3)
A 		71
(3)
A 		68
B 10.4
(1.6)
A 		12.3
(3)
A 		11.8
(2.6)
A 		3.9
(-3)
A 		8
C 31.1
(2)
A 		9.1
(-1.9)
A 		2.7
(-3)
A 		36.6
(3)
A 		34
avr 14.9
(-1.3) 		10
(-2.2) 		6.1
(-3) 		37.2
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 10.6
(-1.4)
A 		6.8
(-3)
A 		9.5
(-1.9)
A 		8.6
(-2.2)
A 		16.6
(1.2)
A 		20.9
(3)
A 		14
B 9
(-1.8)
A 		8.5
(-1.9)
A 		7.3
(-2.2)
A 		4.5
(-3)
A 		14.4
(-0.3)
A 		26.5
(3)
A 		22
C 2.4
(-3)
A 		11.9
(-2.2)
A 		3
(-3)
A 		3.1
(-2.9)
A 		29.3
(-0.8)
A 		76.8
(3)
A 		74
avr 7.3
(-2.7) 		9.1
(-2.4) 		6.6
(-2.8) 		5.4
(-3) 		20.1
(-0.6) 		41.4
(3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-2.9)
A 		1.9
(-2.4)
A 		1
(-3)
A 		10.4
(3)
A 		9
B 3.3
(3)
A 		3
(2.3)
A 		2.7
(1.6)
A 		0.8
(-3)
A 		3
C 10.3
(3)
A 		2.6
(-1.9)
A 		0.9
(-3)
A 		6.2
(0.4)
A 		9
avr 4.9
(1.7) 		2.5
(-1.6) 		1.5
(-3) 		5.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 1.9
(-3)
A 		2.4
(-2.1)
A 		2.1
(-2.6)
A 		2.2
(-2.4)
A 		5
(2.8)
A 		5.1
(3)
A 		3
B 3.1
(-1.7)
A 		2.8
(-1.9)
A 		1.8
(-2.6)
A 		1.2
(-3)
A 		5.8
(0.2)
A 		9.9
(3)
A 		9
C 0.9
(-2.9)
A 		3.6
(-2.3)
A 		0.8
(-3)
A 		0.6
(-3)
A 		9.5
(-0.9)
A 		25.7
(3)
A 		25
avr 2
(-2.7) 		2.9
(-2.2) 		1.6
(-2.9) 		1.3
(-3) 		6.8
(-0.3) 		13.6
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187301_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12740
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.14 NCBI
Target Description Y116F11B.14 /REP_DB=WormBase Gene ID /WP=CE25729 /TR=Q9NEJ3 /GB=CAB81984.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075452(11), NM_058477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075452 NCBI Caenorhabditis elegans Y116F11B.14 (Y116F11B.14) mRNA, complete cds. 11/11 None
NM_058477 NCBI Caenorhabditis elegans Y71G12B.22 (Y71G12B.22) mRNA, complete cds. 11/11 None
SNAP00000001776 ENSEMBL cdna:SNAP chromosome:CEL140:I:1663427:1666709:-1 11/11 None
GENEFINDER00000001808 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1663427:1665745:-1 11/11 None
SNAP00000031769 ENSEMBL cdna:SNAP chromosome:CEL140:V:19897413:19898288:1 11/11 None
GENEFINDER00000031780 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19897488:19898288:1 11/11 None
Y71G12B.22 ENSEMBL cdna:known chromosome:CEL140:I:1663427:1666769:-1 gene:Y71G12B.22 11/11 None
Y116F11B.14 ENSEMBL cdna:known chromosome:CEL140:V:19897488:19898288:1 gene:Y116F11B.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19897487-19898288(+) 100.0 100.0
chrI:1663426-1666774(-) 92.51 96.0
Public Domain and Genome References
Gene Title

Ensembl Y71G12B.22
Y116F11B.14
Entrez Gene 190603 Entrez gene
191025 Entrez gene
SwissProt Q9NEJ3 EMBL-EBI
Q95XP1 EMBL-EBI
WormBase CE25729 Wormbase
CE34425 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB81984 Hypothetical protein Y116F11B.14 [Caenorhabditis elegans] ref|NP_507853.1| Y116F11B.14 [Caenorhabditis elegans] 1.0E-141
blast AAK73923 Hypothetical protein Y71G12B.22 [Caenorhabditis elegans] ref|NP_490878.2| Y71G12B.22 [Caenorhabditis elegans] 1.0E-125
blast AAK73923 Hypothetical protein Y71G12B.22 [Caenorhabditis elegans] ref|NP_490878.2| Y71G12B.22 [Caenorhabditis elegans] 1.0E-121
blast CAB81984 Hypothetical protein Y116F11B.14 [Caenorhabditis elegans] ref|NP_507853.1| Y116F11B.14 [Caenorhabditis elegans] 1.0E-121
Sequence
Target Sequence 
>C. ELEGANS:187301_S_AT
tgagccacggtacaagcctgattctcgagaaaatcatgtccggaaatcgctactacacca
cacaaatctcgatgaatcaggctgccgagctgtgtcacgtggcacacgagctgaaactcg
tgaatcttctgaagctggtggagatggatatgatcaggcgtccgtctacatcgatgaagc
acgccgtcgatgctctcgttttggcgttgaagtttggaatgctggaggctgtgaacaagt
tgatcgatgagattattttcgagtttttcaacggcctcgggctcgtcgggtactgtaaga
gctcgacggcgctggaaatgatttttgataagaacgagatgatgttgaaagaggagattg
aagttggacggttaaattcagaatggaatgagccgttgcctgttggccaagaagtcgtcc
cgtcgttgccacgtggaaataatgctcagatcccgagaatcatgcttaatgtggctaagg
aaagaattcgtagcctggtggccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCCACGGTACAAGCCTGATTCT 652 563 206 Antisense
ACTACACCACACAAATCTCGATGAA 471 101 257 Antisense
GAATCAGGCTGCCGAGCTGTGTCAC 542 327 279 Antisense
GCTGTGTCACGTGGCACACGAGCTG 588 295 294 Antisense
CCGTCTACATCGATGAAGCACGCCG 191 265 367 Antisense
GATGCTCTCGTTTTGGCGTTGAAGT 487 413 394 Antisense
GAATGGAATGAGCCGTTGCCTGTTG 51 333 586 Antisense
TTGCCTGTTGGCCAAGAAGTCGTCC 321 701 601 Antisense
TCCCGTCGTTGCCACGTGGAAATAA 392 585 623 Antisense
TGCTCAGATCCCGAGAATCATGCTT 554 579 648 Antisense
GAAAGAATTCGTAGCCTGGTGGCCC 151 359 685 Antisense
Sequence Source Affymetrix Proprietary Database