[Home] | [Total List]

[187300_s_at]

Description F29A7.6 /REP_DB=WormBase Gene ID /WP=CE09777 /TR=SW:O16207 /GB=AAB65276.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 78      6grp_total > 77      4grp_total > 04      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 153.1
(-1.7)
P 		121.1
(-2.9)
M 		118.4
(-3)
A 		273.7
(3)
P 		155
B 155
(0.8)
P 		146.8
(-0.1)
A 		121.1
(-3)
A 		175
(3)
P 		54
C 126.1
(-0.6)
P 		98.3
(-3)
A 		168.7
(3)
P 		140.7
(0.6)
P 		70
avr 144.7
(-1.2) 		122.1
(-3) 		136.1
(-1.9) 		196.5
(3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 147.7
(-1)
P 		78.6
(-3)
P 		133
(-1.4)
P 		132
(-1.5)
P 		159.9
(-0.7)
P 		288.8
(3)
P 		210
B 130.9
(-0.8)
P 		86.4
(-3)
P 		104
(-2.1)
P 		134.5
(-0.7)
P 		117.2
(-1.5)
P 		210
(3)
P 		124
C 112.6
(-2.4)
M 		114.2
(-2.3)
A 		98.4
(-3)
P 		136.5
(-1.3)
P 		149.7
(-0.7)
P 		233.4
(3)
P 		135
avr 130.4
(-1.5) 		93.1
(-3) 		111.8
(-2.3) 		134.3
(-1.4) 		142.3
(-1) 		244.1
(3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 55.8
(3)
P 		26.3
(-3)
M 		30.9
(-2.1)
A 		40.1
(-0.2)
P 		30
B 49.4
(3)
P 		36.3
(-0.7)
A 		28.1
(-3)
A 		37.3
(-0.4)
P 		21
C 41.7
(0.1)
P 		28.3
(-2.2)
A 		58.8
(3)
P 		23.7
(-3)
P 		35
avr 49
(3) 		30.3
(-3) 		39.3
(-0.1) 		33.7
(-1.9) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 27.2
(-3)
P 		28
(-2.9)
P 		29
(-2.7)
P 		33.5
(-2.1)
P 		48.3
(-0.1)
P 		70.3
(3)
P 		43
B 45.6
(-0.7)
P 		28.7
(-2.6)
P 		25.3
(-3)
P 		35.6
(-1.8)
P 		47.6
(-0.5)
P 		78.3
(3)
P 		53
C 41.7
(-1.1)
M 		34.9
(-1.9)
A 		25.1
(-3)
P 		27.4
(-2.7)
P 		48.5
(-0.4)
P 		78.1
(3)
P 		53
avr 38.2
(-1.6) 		30.5
(-2.5) 		26.5
(-3) 		32.2
(-2.3) 		48.1
(-0.4) 		75.6
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187300_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4937
Sequence Type Exemplar sequence
Representative Public ID F29A7.6 NCBI
Target Description F29A7.6 /REP_DB=WormBase Gene ID /WP=CE09777 /TR=SW:O16207 /GB=AAB65276.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061948(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061948 NCBI Caenorhabditis elegans F29A7.6 (F29A7.6) mRNA, complete cds. 11/11 None
SNAP00000030192 ENSEMBL cdna:SNAP chromosome:CEL140:II:2751830:2752608:-1 11/11 None
GENEFINDER00000030203 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2751830:2752608:-1 11/11 None
F29A7.6 ENSEMBL cdna:known chromosome:CEL140:II:2751763:2752611:-1 gene:F29A7.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2751828-2752607(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29A7.6
Entrez Gene 173618 Entrez gene
SwissProt O16207 EMBL-EBI
WormBase CE09777 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65276 Hypothetical protein F29A7.6 [Caenorhabditis elegans] ref|NP_494349.1| F29A7.6 [Caenorhabditis elegans] gb|AAG50237.1| 2D42 [Caenorhabditis elegans] sp|O16207|YF26_CAEEL Hypothetical protein F29A7.6 in chromosome II 2.0E-60
blast CAE72413 Hypothetical protein CBG19575 [Caenorhabditis briggsae] 2.0E-18
Sequence
Target Sequence 
>C. ELEGANS:187300_S_AT
ccagcgaacgtgtcgtcgtcaaagagctctccagcagtcttctcgacatgaagttcatgc
tgaaaaagaagaagcaaatcgagacgaaggcagcgaagaagaaagaagccaagttggatc
aattaatcaccgaaaaagaggcagaagcgacgtgctccacggaaatcctgaaatcttcag
agccaaagctggaaatttgctatgattacgcaaaattggagaatttaaagttcggacgcc
tgtcttttggtggttttaacaaagaagtcgagcttctcatggaatattacgaaaaactgc
aaaatggaatgctttccgacagcgatgacgacggaatggacgtcgacgacgaggaaatgg
cgaaatcattgggaggtcaaaagctggcggcgctcgacaaaaaatcgcagagcaagcggg
aacgacgtcagcaaaacgagcggaatgaggagacaaccggcggccgacgcttcaacatca
aagatatccgaaaacgatttgccgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAGCGAACGTGTCGTCGTCAAAGA 470 271 20 Antisense
TCGTCAAAGAGCTCTCCAGCAGTCT 125 605 35 Antisense
TCTCCAGCAGTCTTCTCGACATGAA 26 611 47 Antisense
AAGAGGCAGAAGCGACGTGCTCCAC 239 155 155 Antisense
CGTGCTCCACGGAAATCCTGAAATC 427 245 170 Antisense
TTAAAGTTCGGACGCCTGTCTTTTG 58 667 244 Antisense
GGAATGCTTTCCGACAGCGATGACG 213 533 325 Antisense
TTGGGAGGTCAAAAGCTGGCGGCGC 416 669 388 Antisense
AGCTGGCGGCGCTCGACAAAAAATC 231 81 401 Antisense
AGAGCAAGCGGGAACGACGTCAGCA 582 69 428 Antisense
AGATATCCGAAAACGATTTGCCGCC 525 65 501 Antisense
Sequence Source Affymetrix Proprietary Database