[Home] | [Total List]

[187298_at]

Description B0228.6 /REP_DB=WormBase Gene ID /WP=CE01746 /TR=SW:Q09223 /GB=AAC38809.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_high_8_8 > 18      6grp_highest_nonorm > 90      6grp_total > 17      4grp_total > 30      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 143.5
(3)
P 		99.3
(0.5)
P 		35.3
(-3)
A 		103.7
(0.8)
P 		108
B 164.7
(3)
P 		69.8
(-1.9)
P 		47.3
(-3)
P 		149.1
(2.2)
P 		117
C 172.8
(3)
P 		113
(-0.1)
P 		58.6
(-3)
P 		162.4
(2.5)
P 		114
avr 160.3
(3) 		94
(-0.5) 		47.1
(-3) 		138.4
(1.8) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 223.4
(3)
P 		136.9
(-0.4)
P 		166.9
(0.8)
P 		103.2
(-1.8)
P 		71.7
(-3)
P 		137.6
(-0.4)
P 		152
B 184.2
(3)
P 		175.5
(2.5)
P 		138.7
(0.2)
P 		102.2
(-2.1)
P 		88.1
(-3)
P 		114.9
(-1.3)
P 		96
C 253.4
(3)
P 		129.8
(-1.1)
P 		113.9
(-1.6)
P 		71
(-3)
P 		90.6
(-2.4)
P 		126.7
(-1.2)
P 		182
avr 220.3
(3) 		147.4
(-0.2) 		139.8
(-0.5) 		92.1
(-2.6) 		83.5
(-3) 		126.4
(-1.1) 		137
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 52.2
(3)
P 		21.6
(-1.3)
P 		9.2
(-3)
A 		15.2
(-2.2)
P 		43
B 52.5
(3)
P 		17.2
(-2.1)
P 		11
(-3)
P 		31.8
(0)
P 		42
C 57.2
(3)
P 		32.5
(-1)
P 		20.4
(-3)
P 		27.4
(-1.9)
P 		37
avr 54
(3) 		23.8
(-1.5) 		13.5
(-3) 		24.8
(-1.3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 41.2
(1.3)
P 		48.7
(3)
P 		36.4
(0.3)
P 		26.2
(-2)
P 		21.6
(-3)
P 		33.5
(-0.4)
P 		27
B 64.1
(3)
P 		58.4
(2.1)
P 		33.7
(-1.9)
P 		27.1
(-3)
P 		35.8
(-1.6)
P 		42.8
(-0.5)
P 		37
C 93.9
(3)
P 		39.6
(-1.1)
P 		29
(-1.9)
P 		14.3
(-3)
P 		29.3
(-1.9)
P 		42.4
(-0.9)
P 		80
avr 66.4
(3) 		48.9
(0.6) 		33
(-1.6) 		22.5
(-3) 		28.9
(-2.1) 		39.6
(-0.7) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4933
Sequence Type Exemplar sequence
Representative Public ID B0228.6 NCBI
Target Description B0228.6 /REP_DB=WormBase Gene ID /WP=CE01746 /TR=SW:Q09223 /GB=AAC38809.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063226
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000020742 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7754067:7755077:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063226 6/11 Cross Hyb Matching Probes None
SNAP00000020604 3/11 Cross Hyb Matching Probes None
SNAP00000020605 6/11 Cross Hyb Matching Probes None
B0228.6 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7754063-7755074(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE67469 Hypothetical protein CBG12971 [Caenorhabditis briggsae] 5.0E-50
blast AAC38809 Hypothetical protein B0228.6 [Caenorhabditis elegans] ref|NP_495627.2| B0228.6 [Caenorhabditis elegans] sp|Q09223|YP76_CAEEL Hypothetical protein B0228.6 in chromosome II 4.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020742 1 55-77
Sequence
Target Sequence 
>C. ELEGANS:187298_AT
atttacagaatccaaactcccagcaatcaaaatcaattggttctaacatcgaccaaatgt
cttctgaagagttccaacagaaagttcatgattacatgtctgaaattcaacgtacaggac
gagacaaaagaccaagccgccgattcgttgattctgcaagattctatattctgtctgaaa
ttgaaccaattgagttgggcacttcgtagagaatggatacctgatcattcatttttcgaa
ggagttcaagaatttattcgtggaatggaatgggagaatactttcgaagaagaacttttt
gttcgtggagttccaaattttgaccatgattttgagtcggaagagatgactttgaagaca
acattggatggaaagaactataataatcagttcttgaatctaggaagaaaggagattatt
ggaaaacatcattcaatggaatatttcatttctggaagaactttgattagattggtaaag
aacgaaggccaagaactatcacgtacagaatattatctgaaacatggagatttgcatgta
tatgacaaaagaggaaacttagattgtacccgagtatatcgttctcctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTACAGAATCCAAACTCCCAGCA 316 15 331 Antisense
ATCCAAACTCCCAGCAATCAAAATC 108 41 340 Antisense
AAATCAATTGGTTCTAACATCGACC 448 115 360 Antisense
AACATCGACCAAATGTCTTCTGAAG 76 139 375 Antisense
CCGCCGATTCGTTGATTCTGCAAGA 169 263 467 Antisense
TCTGCAAGATTCTATATTCTGTCTG 259 609 483 Antisense
GAACCAATTGAGTTGGGCACTTCGT 493 345 513 Antisense
GGCACTTCGTAGAGAATGGATACCT 542 509 528 Antisense
GAAGGCCAAGAACTATCACGTACAG 703 331 814 Antisense
AGAGGAAACTTAGATTGTACCCGAG 174 69 880 Antisense
GTACCCGAGTATATCGTTCTCCTAC 659 455 896 Antisense
Sequence Source Affymetrix Proprietary Database