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[187297_s_at]

Description B0495.7 /REP_DB=WormBase Gene ID /WP=CE01765 /TR=SW:Q09216 /GB=AAA62526.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 10      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 52      6grp_total > 23      4grp_total > 60      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 587
1 2 3 4 range
A 809.8
(3)
P 		715.5
(2)
P 		746.6
(2.3)
P 		237.3
(-3)
P 		573
B 705.1
(1.7)
P 		668.7
(1.4)
P 		824.4
(3)
P 		253.1
(-3)
P 		571
C 756.4
(2.4)
P 		681.6
(1.6)
P 		811
(3)
P 		252
(-3)
P 		559
avr 757.1
(2.6) 		688.6
(1.8) 		794
(3) 		247.5
(-3) 		547

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 608
1 2 3 4 5 6 range
A 740.3
(1.4)
P 		705.9
(0.8)
P 		728.1
(1.2)
P 		842.4
(3)
P 		462
(-3)
P 		717.9
(1)
P 		380
B 756.3
(3)
P 		590.1
(0.1)
P 		567.5
(-0.3)
P 		739.9
(2.7)
P 		409.3
(-3)
P 		445.2
(-2.4)
P 		347
C 951.6
(2.9)
P 		629.3
(-0.3)
P 		959.3
(3)
P 		731.2
(0.7)
P 		630.7
(-0.2)
P 		351.1
(-3)
P 		608
avr 816.1
(3) 		641.8
(-0.3) 		751.6
(1.8) 		771.2
(2.1) 		500.7
(-3) 		504.7
(-2.9) 		315
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 294.9
(3)
P 		155.3
(-0.2)
P 		195.2
(0.7)
P 		34.7
(-3)
P 		260
B 224.9
(3)
P 		165.2
(0.9)
P 		191
(1.8)
P 		53.9
(-3)
P 		171
C 250.4
(2.2)
P 		196
(0.8)
P 		282.6
(3)
P 		42.5
(-3)
P 		240
avr 256.7
(3) 		172.2
(0.6) 		222.9
(2) 		43.7
(-3) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 136.5
(-3)
P 		251
(3)
P 		158.6
(-1.8)
P 		213.6
(1)
P 		139.4
(-2.8)
P 		174.8
(-1)
P 		115
B 263.1
(3)
P 		196.4
(-0.2)
P 		137.8
(-3)
P 		196
(-0.2)
P 		166.3
(-1.6)
P 		166
(-1.6)
P 		125
C 352.7
(3)
P 		192
(-1.1)
P 		244.2
(0.2)
P 		147
(-2.2)
P 		204.1
(-0.8)
P 		117.5
(-3)
P 		235
avr 250.8
(3) 		213.1
(0.7) 		180.2
(-1.3) 		185.5
(-1) 		169.9
(-2) 		152.8
(-3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187297_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5212
Sequence Type Exemplar sequence
Representative Public ID B0495.7 NCBI
Target Description B0495.7 /REP_DB=WormBase Gene ID /WP=CE01765 /TR=SW:Q09216 /GB=AAA62526.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063217 NCBI Caenorhabditis elegans B0495.7 (B0495.7) mRNA, complete cds. 11/11 None
SNAP00000031532 ENSEMBL cdna:SNAP chromosome:CEL140:II:7702166:7705145:-1 11/11 None
GENEFINDER00000031543 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7702166:7705145:-1 11/11 None
B0495.7.1 ENSEMBL cdna:known chromosome:CEL140:II:7701863:7705148:-1 gene:B0495.7 11/11 None
B0495.7.2 ENSEMBL cdna:known chromosome:CEL140:II:7701927:7705148:-1 gene:B0495.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7702162-7705072(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0495.7
Entrez Gene 174245 Entrez gene
SwissProt Q09216 EMBL-EBI
WormBase CE29550 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264225_AT 24 kDa vacuolar protein, putative at
CANINE_2:CFAAFFX.4099.1.S1_AT similar to putative aminopeptidase Fxna cfa
DROSOPHILA_2:1631555_AT dm
DROSGENOME1:141340_AT dm
CHICKEN:GGAAFFX.270.1.S1_AT similar to KIAA1815 protein gga
HU35KSUBB:RC_N91023_AT KIAA1815 hs
HU35KSUBB:RC_AA156360_AT KIAA1815 hs
HG-U133A:218342_S_AT KIAA1815 hs
HG-U133_PLUS_2:218342_S_AT KIAA1815 hs
HG-U133A_2:218342_S_AT KIAA1815 hs
U133_X3P:G13487920_3P_A_AT KIAA1815 hs
U133_X3P:HS.87128.0.A2_3P_X_AT KIAA1815 hs
HG-U133_PLUS_2:222603_AT KIAA1815 hs
HG-U133B:222603_AT KIAA1815 hs
HG-U95B:45562_F_AT KIAA1815 hs
HG-U95B:45563_F_AT KIAA1815 hs
HG-U95B:54749_AT KIAA1815 hs
HG-U95C:56980_AT KIAA1815 hs
HG-U95E:82895_AT KIAA1815 hs
HU35KSUBC:RC_AA287885_AT KIAA1432 hs
HG-U95B:55357_AT KIAA1432 hs
MU11KSUBA:AA596954_S_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MG-U74AV2:94967_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MG-U74BV2:110541_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MOE430A:1433702_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MOUSE430A_2:1433702_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MOUSE430_2:1433702_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MOE430B:1460599_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MOUSE430_2:1460599_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MOE430B:1446228_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MOUSE430_2:1446228_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MG-U74BV2:106088_AT DNA segment, Chr 19, Wayne State University 12, expressed mm
MU19KSUBA:TC25609_AT DNA segment, Chr 19, Wayne State University 12, expressed, mRNA (cDNA clone MGC:28180 IMAGE:3987774) mm
MU19KSUBB:TC32487_AT DNA segment, Chr 19, Wayne State University 12, expressed, mRNA (cDNA clone MGC:28180 IMAGE:3987774) mm
RG-U34C:RC_AI234678_AT putative aminopeptidase Fxna rn
RAE230A:1388889_AT putative aminopeptidase Fxna rn
RAT230_2:1388889_AT putative aminopeptidase Fxna rn
RAE230B:1384975_AT putative aminopeptidase Fxna rn
RAT230_2:1384975_AT putative aminopeptidase Fxna rn
RG-U34B:RC_AI030235_AT Putative aminopeptidase Fxna rn
RG-U34C:RC_AI071112_AT Putative aminopeptidase Fxna rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA62526 Hypothetical protein B0495.7 [Caenorhabditis elegans] ref|NP_495618.1| B0495.7 [Caenorhabditis elegans] sp|Q09216|YP67_CAEEL Hypothetical protein B0495.7 in chromosome II 0.0
blast D88216 protein B0495.7 [imported] - Caenorhabditis elegans 0.0
blast CAE67479 Hypothetical protein CBG12983 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495618.1 9 35-57,381-403,424-446,456-473,493-515,519-538,545-567,587-609,616-635
B0495.7.1 9 35-57,381-403,424-446,456-473,493-515,519-538,545-567,587-609,616-635
B0495.7.2 9 35-57,381-403,424-446,456-473,493-515,519-538,545-567,587-609,616-635
SNAP00000031532 9 35-57,381-403,424-446,456-473,493-515,519-538,545-567,587-609,616-635
GENEFINDER00000031543 9 35-57,381-403,424-446,456-473,493-515,519-538,545-567,587-609,616-635
Sequence
Target Sequence 
>C. ELEGANS:187297_S_AT
cactcgactacagaggtgcatccgatctccctgatcattcatttttgcaaggaagttctg
caccaaattgcacaggagttgtcgatgagtactgtcgtatgccatattatacagctattc
acgagctgtttccaccagagcaatccctttgggttcctgtcccatcacccgtagtgcttc
catatccaattgatttgaagcttgtctcacgtcatgctatgggcgaaaacttgaatctaa
catttgagattcgtggtggatatgataagatgtctcttcacgtaactcctctcaatgatt
atgatcttctttcctggtccttcactgatattgatatcaaagaatttggtcgtagacaga
cttatttcgttttcatgacctatggacatgaagctccagaaaaaaatggagtggctcctg
atccggagaagcatgagaacatagagctatccgttgcaacacactatgctcacggaatct
atcaggatactgaaacattgaggcaattgagagcaatgatttcatcaagaagacagacac
cagagcaagctgttggatggtggagatggggcatcacaatggtcggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTCGACTACAGAGGTGCATCCGA 404 197 1985 Antisense
GTCGATGAGTACTGTCGTATGCCAT 447 473 2065 Antisense
AGAGCAATCCCTTTGGGTTCCTGTC 332 69 2121 Antisense
TGAAGCTTGTCTCACGTCATGCTAT 217 575 2180 Antisense
TCTTCACGTAACTCCTCTCAATGAT 148 617 2259 Antisense
ATGATTATGATCTTCTTTCCTGGTC 582 45 2279 Antisense
TTTCCTGGTCCTTCACTGATATTGA 441 667 2294 Antisense
GAGTGGCTCCTGATCCGGAGAAGCA 57 403 2393 Antisense
TAGAGCTATCCGTTGCAACACACTA 207 653 2426 Antisense
AACACACTATGCTCACGGAATCTAT 565 135 2442 Antisense
AGATGGGGCATCACAATGGTCGGCG 402 65 2548 Antisense
Sequence Source Affymetrix Proprietary Database