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[187296_at]

Description ZK632.13 /REP_DB=WormBase Gene ID /WP=CE01711 /TR=SW:Q10120 /GB=CAA80188.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 93      6grp_total > 78      4grp_total > 11      6grp_highest_sub > Da      6grp_cgc > 59      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 320
1 2 3 4 range
A 330.9
(-0.3)
P 		289.4
(-1.4)
P 		227.3
(-3)
P 		454.1
(3)
P 		227
B 298.2
(-2.9)
P 		293.7
(-3)
P 		336.7
(-2)
P 		547.6
(3)
P 		254
C 352.8
(-0.7)
P 		327
(-1.4)
P 		271
(-3)
P 		484.6
(3)
P 		214
avr 327.3
(-1.6) 		303.4
(-2.3) 		278.3
(-3) 		495.4
(3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 625
1 2 3 4 5 6 range
A 320.9
(-2.3)
P 		315.6
(-2.5)
P 		349.9
(-1.3)
P 		300.5
(-3)
P 		336.6
(-1.8)
P 		479.9
(3)
P 		179
B 312
(-2.7)
P 		290.1
(-3)
P 		384.8
(-1.6)
P 		314.8
(-2.6)
P 		469.6
(-0.4)
P 		708.5
(3)
P 		418
C 299.3
(-2.6)
P 		285.2
(-2.7)
P 		297.3
(-2.6)
P 		256
(-3)
P 		571.7
(0)
P 		881.1
(3)
P 		625
avr 310.7
(-2.7) 		297
(-2.9) 		344
(-2.2) 		290.4
(-3) 		459.3
(-0.5) 		689.8
(3) 		399
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 120.5
(3)
P 		62.8
(-2.7)
P 		59.4
(-3)
P 		66.5
(-2.3)
P 		61
B 95.1
(0.1)
P 		72.5
(-3)
P 		78
(-2.3)
P 		116.7
(3)
P 		44
C 116.8
(3)
P 		94
(-0.9)
P 		94.4
(-0.8)
P 		81.7
(-3)
P 		35
avr 110.8
(3) 		76.4
(-3) 		77.3
(-2.8) 		88.3
(-0.9) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 244
1 2 3 4 5 6 range
A 59.2
(-3)
P 		112.3
(2.5)
P 		76.2
(-1.2)
P 		76.2
(-1.2)
P 		101.6
(1.4)
P 		116.8
(3)
P 		58
B 108.6
(-2.2)
P 		96.6
(-2.6)
P 		93.4
(-2.7)
P 		83.4
(-3)
P 		190.8
(0.6)
P 		264.2
(3)
P 		181
C 110.9
(-1.5)
P 		87
(-2.1)
P 		75.7
(-2.4)
P 		51.5
(-3)
P 		185
(0.3)
P 		295
(3)
P 		244
avr 92.9
(-2.1) 		98.6
(-1.9) 		81.8
(-2.6) 		70.4
(-3) 		159.1
(0.4) 		225.3
(3) 		155
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6407
Sequence Type Exemplar sequence
Representative Public ID ZK632.13 NCBI
Target Description ZK632.13 /REP_DB=WormBase Gene ID /WP=CE01711 /TR=SW:Q10120 /GB=CAA80188.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066778(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066778 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-52) (lin-52) mRNA, complete cds. 11/11 A 
SNAP00000031479 ENSEMBL cdna:SNAP chromosome:CEL140:III:9824052:9824637:-1 11/11 None
GENEFINDER00000031483 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9824052:9827045:-1 11/11 None
ZK632.13 ENSEMBL cdna:known chromosome:CEL140:III:9823974:9824644:-1 gene:ZK632.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9824047-9824633(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lin-52
Ensembl ZK632.13
Entrez Gene 176393 Entrez gene
SwissProt Q10120 EMBL-EBI
WormBase CE01711 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA80188 Hypothetical protein ZK632.13 [Caenorhabditis elegans] ref|NP_499179.1| abnormal cell LINeage family member (lin-52) [Caenorhabditis elegans] gb|AAP85302.1| LIN-52 [Caenorhabditis elegans] sp|Q10120|LIN52_CAEEL Protein lin-52 (Abnormal cell lineage protein 52) 2.0E-88
blast CAA80188 Hypothetical protein ZK632.13 [Caenorhabditis elegans] ref|NP_499179.1| abnormal cell LINeage family member (lin-52) [Caenorhabditis elegans] gb|AAP85302.1| LIN-52 [Caenorhabditis elegans] sp|Q10120|LIN52_CAEEL Protein lin-52 (Abnormal cell lineage protein 52) 6.0E-88
blast CAE65119 Hypothetical protein CBG09984 [Caenorhabditis briggsae] 1.0E-55
blast CAE65119 Hypothetical protein CBG09984 [Caenorhabditis briggsae] 6.0E-55
blast A88567 protein ZK632.9 [imported] - Caenorhabditis elegans 6.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR000612 EMBL-EBI Protein of unknown function UPF0057 4.0E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031483 2 4-23,28-50
Sequence
Target Sequence 
>C. ELEGANS:187296_AT
tgtcgcgtccgctaggatttattggatacgaatttggagatgacgaaatgttcgtccaac
aaatgatcgaaaagaaatcaaacgcagaacaggcgaaaatgcttgaacaacagaaaaaga
tgctcgaatgcaccgaaacaatgccagaagaaagtgagccagttccaatgaaatgtctcg
attttgaagaagcatttcaaagcgaatcagtatcaaaaggttacgaatcgccatacaaga
atatttcgtttctcaaggaagatgctgtgactgttaatacaatgagccactgcccagccg
acgatatcgccaagctcatccgaaacattcaaaactcggtgtacactcttggaatcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGCGTCCGCTAGGATTTATTGG 542 555 14 Antisense
GAAATGTTCGTCCAACAAATGATCG 354 361 58 Antisense
ACAGGCGAAAATGCTTGAACAACAG 112 107 102 Antisense
GATGCTCGAATGCACCGAAACAATG 146 413 132 Antisense
GCCAGAAGAAAGTGAGCCAGTTCCA 474 277 156 Antisense
GCCAGTTCCAATGAAATGTCTCGAT 609 279 171 Antisense
GGTTACGAATCGCCATACAAGAATA 102 507 232 Antisense
TTCTCAAGGAAGATGCTGTGACTGT 645 691 263 Antisense
CGCCAAGCTCATCCGAAACATTCAA 51 257 321 Antisense
CATTCAAAACTCGGTGTACACTCTT 700 211 339 Antisense
CTCGGTGTACACTCTTGGAATCGAA 175 233 348 Antisense
Sequence Source Affymetrix Proprietary Database