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[187293_at]

Description W02B3.4 /REP_DB=WormBase Gene ID /WP=CE02076 /TR=SW:Q09341 /GB=AAA64323.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 112.6
(1.1)
P 		68.2
(-3)
A 		73.9
(-2.5)
A 		133.6
(3)
A 		65
B 80.8
(1.5)
P 		89.4
(3)
M 		54.3
(-3)
P 		82.7
(1.9)
A 		35
C 107.2
(1.4)
P 		85.3
(-1)
P 		66.3
(-3)
A 		122
(3)
A 		56
avr 100.2
(1.4) 		81
(-1) 		64.8
(-3) 		112.8
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 124
(3)
A 		80.7
(-0.1)
P 		102.3
(1.4)
P 		48.2
(-2.4)
A 		79.1
(-0.2)
A 		40.1
(-3)
A 		84
B 94.1
(3)
P 		82.8
(0.7)
M 		68.4
(-2.2)
A 		73.7
(-1.1)
P 		79.2
(0)
P 		64.3
(-3)
M 		30
C 92.3
(0.2)
A 		80.1
(-0.7)
P 		105.7
(1.2)
P 		129.2
(3)
M 		93.4
(0.3)
A 		50
(-3)
A 		79
avr 103.5
(3) 		81.2
(0.4) 		92.1
(1.7) 		83.7
(0.7) 		83.9
(0.7) 		51.5
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 41
(3)
P 		14.8
(-3)
A 		19.3
(-2)
A 		19.6
(-1.9)
A 		26
B 25.8
(3)
P 		22.1
(1.3)
M 		12.6
(-3)
P 		17.6
(-0.7)
A 		13
C 35.5
(3)
P 		24.5
(-1.4)
P 		23.1
(-2)
A 		20.6
(-3)
A 		15
avr 34.1
(3) 		20.5
(-2.2) 		18.3
(-3) 		19.3
(-2.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 22.9
(1.2)
A 		28.7
(3)
P 		22.3
(1)
P 		12.2
(-2.2)
A 		23.9
(1.5)
A 		9.8
(-3)
A 		19
B 32.7
(3)
P 		27.5
(1.1)
M 		16.6
(-3)
A 		19.5
(-1.9)
P 		32.2
(2.8)
P 		24
(-0.2)
M 		16
C 34.2
(3)
A 		24.4
(-0.4)
P 		26.9
(0.5)
P 		26
(0.2)
M 		30.2
(1.6)
A 		16.7
(-3)
A 		18
avr 29.9
(3) 		26.9
(1.6) 		21.9
(-0.7) 		19.2
(-1.9) 		28.8
(2.5) 		16.8
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187293_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8159
Sequence Type Exemplar sequence
Representative Public ID W02B3.4 NCBI
Target Description W02B3.4 /REP_DB=WormBase Gene ID /WP=CE02076 /TR=SW:Q09341 /GB=AAA64323.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064835(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064835 NCBI Caenorhabditis elegans W02B3.4 (W02B3.4) mRNA, complete cds. 10/11 None
GENEFINDER00000011596 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:680286:683323:-1 10/11 None
SNAP00000011591 ENSEMBL cdna:SNAP chromosome:CEL140:III:680890:683323:-1 10/11 None
W02B3.4 ENSEMBL cdna:known chromosome:CEL140:III:680790:683323:-1 gene:W02B3.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:680769-683323(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02B3.4
Entrez Gene 189104 Entrez gene
SwissProt Q09341 EMBL-EBI
WormBase CE34600 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64323 Hypothetical protein W02B3.4 [Caenorhabditis elegans] ref|NP_497236.2| W02B3.4 [Caenorhabditis elegans] sp|Q09341|YR24_CAEEL Hypothetical protein W02B3.4 in chromosome III 0.0
blast CAE69205 Hypothetical protein CBG15245 [Caenorhabditis briggsae] 1.0E-138
blast CAE69205 Hypothetical protein CBG15245 [Caenorhabditis briggsae] 1.0E-137
blast AAB66184 Hypothetical protein T07D3.4 [Caenorhabditis elegans] ref|NP_493840.1| T07D3.4 [Caenorhabditis elegans] 1.0E-107
blast AAB66184 Hypothetical protein T07D3.4 [Caenorhabditis elegans] ref|NP_493840.1| T07D3.4 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR009644 EMBL-EBI Fukutin-related 1.0E-25
Pfam IPR009644 EMBL-EBI Fukutin-related 5.0E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497236.2 1 5-27
W02B3.4 1 5-27
GENEFINDER00000011596 1 5-27
SNAP00000011591 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:187293_AT
aaatcttgcagttccagctgacatcaaattattcgtggagttttggaaacgtgccaaatt
tgtcaactgtatgaatttgcacatcccaagagccgggtctaaggttcgaatgccggcgag
accatcatccgaagtgttatcccgtcttcgagacgaactcatagagaatcgaatgttccc
atttttaaatggcggaacccttctgggatggtaccgcgaatgttctgtaatcccacatac
gttggatatggatatttctgtgtttgcagaggattttaatttgaattttgtggaacaaat
ggagcagaatttatccgattttcgaattaagaggaaattcggaatggtttacgtgtttct
aatgtacaagggtgtggagaatggatcggtgacccatcattgggtgggtggagttgctcc
cgacggcaccaagtacaagtactcctatcctgtttacgatccattctgtgcagcagacct
ccacggtcatatattttgggtcacttgtactccgaacgagaaaattgtgggagagcttct
taccggcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTTGCAGTTCCAGCTGACATC 456 117 456 Antisense
TGCACATCCCAAGAGCCGGGTCTAA 21 577 533 Antisense
AAGGTTCGAATGCCGGCGAGACCAT 411 159 556 Antisense
ATCATCCGAAGTGTTATCCCGTCTT 346 29 579 Antisense
GCGGAACCCTTCTGGGATGGTACCG 588 293 647 Antisense
GGTACCGCGAATGTTCTGTAATCCC 688 503 665 Antisense
CTCCCGACGGCACCAAGTACAAGTA 19 233 872 Antisense
GTACAAGTACTCCTATCCTGTTTAC 285 461 888 Antisense
TCCTGTTTACGATCCATTCTGTGCA 31 593 903 Antisense
TGCAGCAGACCTCCACGGTCATATA 424 577 924 Antisense
TTGTGGGAGAGCTTCTTACCGGCTA 474 705 980 Antisense
Sequence Source Affymetrix Proprietary Database