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[187292_s_at]

Description C05C10.5 /REP_DB=WormBase Gene ID /WP=CE01469 /TR=SW:Q09230 /GB=CAA88203.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 46.3
(-1.9)
A 		35.7
(-2.3)
A 		17.6
(-3)
A 		180.8
(3)
A 		163
B 34.7
(-2.4)
A 		32.4
(-3)
A 		55.9
(3)
A 		34.8
(-2.4)
A 		24
C 58.5
(0.5)
P 		30.5
(-3)
A 		44
(-1.3)
A 		78.4
(3)
A 		48
avr 46.5
(-1.7) 		32.9
(-3) 		39.2
(-2.4) 		98
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 825
1 2 3 4 5 6 range
A 54.1
(-2.7)
A 		7.9
(-3)
A 		21
(-2.9)
A 		20.2
(-2.9)
A 		477.2
(0.4)
P 		830.7
(3)
P 		823
B 44
(-2.7)
A 		5.6
(-3)
A 		70.6
(-2.4)
P 		115.9
(-2.1)
P 		521
(1.4)
P 		708
(3)
P 		702
C 23.8
(-3)
A 		41.5
(-2.9)
A 		25.4
(-3)
A 		37.2
(-2.9)
A 		553
(1.3)
P 		764.6
(3)
P 		741
avr 40.6
(-2.8) 		18.3
(-3) 		39
(-2.8) 		57.8
(-2.7) 		517.1
(1) 		767.8
(3) 		750
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 16.9
(0.4)
A 		7.8
(-2.1)
A 		4.6
(-3)
A 		26.5
(3)
A 		22
B 11.1
(1)
A 		8
(-2.4)
A 		13
(3)
A 		7.4
(-3)
A 		6
C 19.4
(3)
P 		8.8
(-3)
A 		15.4
(0.7)
A 		13.2
(-0.5)
A 		11
avr 15.8
(3) 		8.2
(-3) 		11
(-0.8) 		15.7
(2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 262
1 2 3 4 5 6 range
A 10
(-2.8)
A 		2.8
(-3)
A 		4.6
(-2.9)
A 		5.1
(-2.9)
A 		144
(1.2)
P 		202.2
(3)
P 		199
B 15.3
(-2.7)
A 		1.9
(-3)
A 		17.1
(-2.7)
P 		30.7
(-2.3)
P 		211.7
(1.8)
P 		264
(3)
P 		262
C 8.8
(-2.9)
A 		12.6
(-2.9)
A 		6.5
(-3)
A 		7.5
(-3)
A 		178.9
(1.1)
P 		255.9
(3)
P 		249
avr 11.4
(-2.9) 		5.8
(-3) 		9.4
(-2.9) 		14.4
(-2.8) 		178.2
(1.4) 		240.7
(3) 		235
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187292_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3645
Sequence Type Exemplar sequence
Representative Public ID C05C10.5 NCBI
Target Description C05C10.5 /REP_DB=WormBase Gene ID /WP=CE01469 /TR=SW:Q09230 /GB=CAA88203.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026747(11), NM_001026748(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026747 NCBI Caenorhabditis elegans C05C10.5a (C05C10.5) mRNA, complete cds. 11/11 None
NM_001026748 NCBI Caenorhabditis elegans C05C10.5b (C05C10.5) mRNA, complete cds. 10/11 None
SNAP00000016015 ENSEMBL cdna:SNAP chromosome:CEL140:II:9939138:9939925:1 11/11 None
GENEFINDER00000016019 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9939138:9940062:1 11/11 None
C05C10.5a ENSEMBL cdna:known chromosome:CEL140:II:9939090:9940220:1 gene:C05C10.5 11/11 None
C05C10.5b ENSEMBL cdna:known chromosome:CEL140:II:9939130:9939925:1 gene:C05C10.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9939134-9939922(+) 100.0 100.0
Public Domain and Genome References
Ensembl C05C10.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88203 Hypothetical protein C05C10.5a [Caenorhabditis elegans] ref|NP_001021918.1| C05C10.5a [Caenorhabditis elegans] sp|Q09230|YQ15_CAEEL Hypothetical protein C05C10.5 in chromosome II 1.0E-108
blast CAE48493 Hypothetical protein C05C10.5b [Caenorhabditis elegans] ref|NP_001021919.1| C05C10.5b [Caenorhabditis elegans] 1.0E-108
Sequence
Target Sequence 
>C. ELEGANS:187292_S_AT
tcgctgggaccagttgcgtgctgtagaagctgatattctgtgtcccccgcctgcagatcc
attccaaatcttccccagtggatggaccagagcctcggagctcagcgaaaagggatggag
agaattgcttgaccgcagaagatcgcaaagcccgccaccacgtgaaccatcaccagacgt
cagaagagcgatcagacggacaccgccgccacgtgtcaaccgtgtggctccgattcgact
tccagagcggcgtccattgcggcaattgaacgccaatgacgccagaagaccagcacaaga
cgctgcaaatcgcataaatcaagagaatatgcgtgcaggaaatatcgacaatgggcagcc
acgtcgtcgagcactctccccgacacaattgccaggagttcgtgcgattccaaaggactt
caatcgcttcttccgtggtcttctgacacctggagagttctttgccaaatcgcaaacccg
gtatcttgggccattcgacgaaatgccaacggaggatacacttccagcagccgacgagta
catcattctgcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTGGGACCAGTTGCGTGCTGTA 397 597 33 Antisense
CTGCAGATCCATTCCAAATCTTCCC 540 237 83 Antisense
AATCTTCCCCAGTGGATGGACCAGA 346 167 99 Antisense
GACCGCAGAAGATCGCAAAGCCCGC 604 381 163 Antisense
CGCCACGTGTCAACCGTGTGGCTCC 216 257 239 Antisense
CGACAATGGGCAGCCACGTCGTCGA 118 251 378 Antisense
CTCTCCCCGACACAATTGCCAGGAG 555 231 406 Antisense
CAAAGGACTTCAATCGCTTCTTCCG 346 193 443 Antisense
TGGTCTTCTGACACCTGGAGAGTTC 507 549 468 Antisense
CAAACCCGGTATCTTGGGCCATTCG 192 183 505 Antisense
GCCGACGAGTACATCATTCTGCAGC 169 285 562 Antisense
Sequence Source Affymetrix Proprietary Database