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[187291_at]

Description W02B3.5 /REP_DB=WormBase Gene ID /WP=CE02077 /TR=SW:Q09342 /GB=AAA64324.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 3
(-3)
A 		4.4
(-2.8)
A 		5.8
(-2.6)
A 		43.4
(3)
A 		40
B 15
(-3)
A 		26
(0.6)
A 		33.4
(3)
A 		32.8
(2.8)
A 		18
C 3.8
(-2.5)
A 		16.5
(0.1)
A 		1.6
(-3)
A 		30.1
(3)
A 		29
avr 7.3
(-3) 		15.6
(-1.2) 		13.6
(-1.7) 		35.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 3.9
(-2.8)
A 		2.9
(-3)
A 		37.5
(3)
A 		29.2
(1.6)
A 		35.1
(2.6)
A 		10.5
(-1.7)
A 		35
B 14.3
(0.2)
A 		18.3
(1.4)
A 		23.5
(3)
A 		4.3
(-2.8)
A 		5.1
(-2.6)
A 		3.7
(-3)
A 		20
C 21.9
(0.2)
A 		32.9
(2.2)
A 		4
(-3)
A 		37.6
(3)
A 		21
(0.1)
A 		3.8
(-3)
A 		34
avr 13.4
(-0.5) 		18
(1.1) 		21.7
(2.3) 		23.7
(3) 		20.4
(1.9) 		6
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.1
(-2.8)
A 		0.9
(-3)
A 		1.5
(-2.3)
A 		6.4
(3)
A 		6
B 4.8
(-3)
A 		6.4
(0.3)
A 		7.7
(3)
A 		7
(1.6)
A 		3
C 1.2
(-2.1)
A 		4.7
(2.5)
A 		0.5
(-3)
A 		5.1
(3)
A 		5
avr 2.4
(-3) 		4
(-0.5) 		3.2
(-1.7) 		6.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.7
(-3)
A 		1
(-2.8)
A 		8.2
(1.5)
A 		7.4
(1.1)
A 		10.6
(3)
A 		2.6
(-1.8)
A 		10
B 5
(1.7)
A 		6.1
(3)
A 		5.7
(2.5)
A 		1.1
(-3)
A 		2.1
(-1.8)
A 		1.4
(-2.6)
A 		5
C 8.1
(1.7)
A 		10
(3)
A 		1
(-3)
A 		7.6
(1.4)
A 		6.8
(0.9)
A 		1.3
(-2.8)
A 		9
avr 4.6
(0.6) 		5.7
(2) 		5
(1.1) 		5.4
(1.6) 		6.5
(3) 		1.8
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187291_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8258
Sequence Type Exemplar sequence
Representative Public ID W02B3.5 NCBI
Target Description W02B3.5 /REP_DB=WormBase Gene ID /WP=CE02077 /TR=SW:Q09342 /GB=AAA64324.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064836 NCBI Caenorhabditis elegans W02B3.5 (W02B3.5) mRNA, complete cds. 11/11 None
W02B3.5 ENSEMBL cdna:known chromosome:CEL140:III:686231:689148:-1 gene:W02B3.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011597 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:686230-689148(-) 85.62 100.0
Public Domain and Genome References
Gene Title
Ensembl W02B3.5
Entrez Gene 189105 Entrez gene
SwissProt Q09342 EMBL-EBI
WormBase CE02077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64324 Hypothetical protein W02B3.5 [Caenorhabditis elegans] ref|NP_497237.1| W02B3.5 [Caenorhabditis elegans] sp|Q09342|YR25_CAEEL Hypothetical protein W02B3.5 in chromosome III 1.0E-138
blast CAE65718 Hypothetical protein CBG10798 [Caenorhabditis briggsae] 3.0E-19
blast CAE69205 Hypothetical protein CBG15245 [Caenorhabditis briggsae] 6.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR009644 EMBL-EBI Fukutin-related 2.9E-19
Pfam IPR009644 EMBL-EBI Fukutin-related 1.9E-24
Sequence
Target Sequence 
>C. ELEGANS:187291_AT
gttgccaagccatttttgagtactttttcagatgttttagctaaaattaatttcatttcc
cagatgaatcaaaatttaaaatattccatgttattccaaattgtggagatttcccaaccg
agcacggcttcaaacgacctcgcggctcttcaaaatgtgctaattgaaaatggaatgttt
ccatttttaaacggaagaacattacttaattggtataaggaatgtactacaaagcatgaa
attttcaattttatggtcatggctagcaatttcaatttgaacttcttagaaaacttggag
aaaggacaatctaaattgaagttggtgcagaaaaatagaacagtgggaaatggattgagg
attactgtagctttgaatgaagtaaaggcacatataggattactgtacaaggagttgaat
gaagatggatctgtggtacattggacaaaaggaaacaacttcaaaaatcatacaattcgc
ttttcaacctatgacccatggtgttcaactgatattcacggtcatttgttttggatttct
tgtactcctggaacacgtatagccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCCAAGCCATTTTTGAGTACTT 594 437 175 Antisense
GAGTACTTTTTCAGATGTTTTAGCT 677 397 192 Antisense
TTGTGGAGATTTCCCAACCGAGCAC 202 709 275 Antisense
CCAACCGAGCACGGCTTCAAACGAC 43 277 288 Antisense
TATGGTCATGGCTAGCAATTTCAAT 566 653 426 Antisense
GATGGATCTGTGGTACATTGGACAA 441 407 598 Antisense
CGCTTTTCAACCTATGACCCATGGT 388 253 652 Antisense
TGACCCATGGTGTTCAACTGATATT 96 571 666 Antisense
GATATTCACGGTCATTTGTTTTGGA 590 425 685 Antisense
GTTTTGGATTTCTTGTACTCCTGGA 49 449 702 Antisense
GTACTCCTGGAACACGTATAGCCGA 288 457 716 Antisense
Sequence Source Affymetrix Proprietary Database