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[187290_at]

Description F07F6.2 /REP_DB=WormBase Gene ID /WP=CE01895 /TR=SW:Q09303 /GB=AAC46776.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 43      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 53.5
(1)
A 		30.7
(-3)
A 		51.5
(0.7)
A 		64.7
(3)
A 		34
B 62.5
(2.4)
A 		68.2
(3)
P 		46.1
(0.6)
A 		13.1
(-3)
A 		55
C 30
(-3)
A 		110.6
(3)
A 		46.3
(-1.8)
A 		58.6
(-0.9)
A 		81
avr 48.7
(-2.2) 		69.8
(3) 		48
(-2.4) 		45.5
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 36.2
(1.4)
A 		48.5
(3)
A 		38.6
(1.7)
M 		3.3
(-3)
A 		18.2
(-1)
A 		40.9
(2)
A 		45
B 36.1
(-1.7)
A 		55.9
(0)
M 		91.6
(3)
A 		61.9
(0.5)
A 		27.4
(-2.4)
A 		20.1
(-3)
A 		72
C 18.2
(-3)
A 		63.1
(2.1)
A 		71.4
(3)
P 		44.2
(-0.1)
A 		23.5
(-2.4)
A 		41.7
(-0.3)
A 		53
avr 30.2
(-2) 		55.8
(1.5) 		67.2
(3) 		36.5
(-1.2) 		23
(-3) 		34.2
(-1.5) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 19.5
(3)
A 		6.7
(-3)
A 		13.5
(0.2)
A 		9.5
(-1.7)
A 		13
B 19.9
(3)
A 		16.8
(1.9)
P 		10.7
(-0.2)
A 		2.8
(-3)
A 		17
C 9.9
(-3)
A 		31.8
(3)
A 		16.2
(-1.3)
A 		9.9
(-3)
A 		22
avr 16.4
(1.9) 		18.4
(3) 		13.5
(0.3) 		7.4
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.7
(-0.8)
A 		17.2
(3)
A 		8.4
(-0.2)
M 		0.8
(-3)
A 		5.5
(-1.3)
A 		9.9
(0.3)
A 		16
B 12.6
(-0.9)
A 		18.6
(1.5)
M 		22.2
(3)
A 		16.4
(0.6)
A 		11.1
(-1.5)
A 		7.5
(-3)
A 		15
C 6.7
(-3)
A 		19.3
(3)
A 		18.2
(2.5)
P 		8.9
(-2)
A 		7.6
(-2.6)
A 		13.9
(0.4)
A 		13
avr 8.7
(-2.7) 		18.4
(3) 		16.3
(1.8) 		8.7
(-2.7) 		8.1
(-3) 		10.4
(-1.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5411
Sequence Type Exemplar sequence
Representative Public ID F07F6.2 NCBI
Target Description F07F6.2 /REP_DB=WormBase Gene ID /WP=CE01895 /TR=SW:Q09303 /GB=AAC46776.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062629 NCBI Caenorhabditis elegans F07F6.2 (F07F6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000006566 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5430180:5431188:1 11/11 None
F07F6.2 ENSEMBL cdna:known chromosome:CEL140:II:5430362:5431392:1 gene:F07F6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006558 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5430177-5431390(+) 88.03 100.0
Public Domain and Genome References
Gene Title
Ensembl F07F6.2
Entrez Gene 184147 Entrez gene
SwissProt Q09303 EMBL-EBI
WormBase CE35272 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46776 Hypothetical protein F07F6.2 [Caenorhabditis elegans] ref|NP_495030.2| F07F6.2 [Caenorhabditis elegans] sp|Q09303|YQP2_CAEEL Hypothetical protein F07F6.2 in chromosome III 5.0E-99
blast AAC46776 Hypothetical protein F07F6.2 [Caenorhabditis elegans] ref|NP_495030.2| F07F6.2 [Caenorhabditis elegans] sp|Q09303|YQP2_CAEEL Hypothetical protein F07F6.2 in chromosome III 8.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495030.2 3 15-34,87-104,132-151
F07F6.2 3 15-34,87-104,132-151
GENEFINDER00000006566 3 34-56,109-126,154-173
Sequence
Target Sequence 
>C. ELEGANS:187290_AT
ttcgacgagatcatgcacaagtgccactaaatcactacagaatggtttaattgcactttt
catattttacgcattgaaaatctacaaaaaagtctatcttatcgtgctttatataattct
tatcatccattttggctttgaaataaggaatgcgaaatcggaaacttctaggaaatatat
agcaatttctacccgtgaaatgttcatgtattatgttgaattgctcctactctattttca
aaatctgctgctccttccttacatctgtggtggttatttcttaatcagacatgtgcatcg
aatcccatcaaaagaagaagtcgatcgtcaaactctgaaattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGACGAGATCATGCACAAGTGCC 344 689 246 Antisense
GCACAAGTGCCACTAAATCACTACA 616 317 260 Antisense
AAGTCTATCTTATCGTGCTTTATAT 502 155 335 Antisense
TAATTCTTATCATCCATTTTGGCTT 339 635 359 Antisense
ATATATAGCAATTTCTACCCGTGAA 681 19 420 Antisense
GAATTGCTCCTACTCTATTTTCAAA 10 325 463 Antisense
CTATTTTCAAAATCTGCTGCTCCTT 424 223 477 Antisense
TCCTTCCTTACATCTGTGGTGGTTA 130 591 497 Antisense
TGTGGTGGTTATTTCTTAATCAGAC 535 553 511 Antisense
GACATGTGCATCGAATCCCATCAAA 414 369 533 Antisense
GTCGATCGTCAAACTCTGAAATTCA 32 475 565 Antisense
Sequence Source Affymetrix Proprietary Database