[Home] | [Total List]

[187289_at]

Description B0304.4 /REP_DB=WormBase Gene ID /WP=CE03872 /TR=SW:Q10933 /GB=AAK31393.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      6grp_total > 87      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 100.5
(-2.8)
P 		111.6
(-2.7)
P 		91.9
(-3)
A 		433.9
(3)
P 		342
B 97.8
(-3)
P 		117.3
(-2.7)
A 		123.6
(-2.6)
A 		460.5
(3)
P 		363
C 109.9
(-2.4)
P 		96
(-2.7)
A 		73.5
(-3)
A 		463.5
(3)
P 		390
avr 102.7
(-2.9) 		108.3
(-2.8) 		96.3
(-3) 		452.6
(3) 		356

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 745
1 2 3 4 5 6 range
A 139.9
(-2.5)
A 		84.7
(-3)
A 		193.9
(-2)
P 		279.7
(-1.1)
P 		386.7
(-0.1)
P 		710.5
(3)
P 		626
B 138
(-2.8)
A 		124.9
(-3)
P 		181.4
(-2.3)
P 		271
(-1.3)
P 		391.2
(0.2)
P 		630.7
(3)
P 		506
C 158.9
(-2.8)
P 		138.2
(-3)
M 		147.8
(-2.9)
P 		279.9
(-1.8)
P 		401.3
(-0.7)
P 		829.8
(3)
P 		692
avr 145.6
(-2.7) 		115.9
(-3) 		174.4
(-2.4) 		276.9
(-1.4) 		393.1
(-0.3) 		723.7
(3) 		608
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 36.6
(-1.1)
P 		24.2
(-3)
P 		24
(-3)
A 		63.5
(3)
P 		40
B 31.2
(-2.8)
P 		29
(-3)
A 		28.6
(-3)
A 		98.1
(3)
P 		70
C 36.4
(-1.8)
P 		27.6
(-2.8)
A 		25.6
(-3)
A 		78.2
(3)
P 		53
avr 34.7
(-2) 		26.9
(-2.9) 		26.1
(-3) 		79.9
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 25.8
(-3)
A 		30.1
(-2.8)
A 		42.2
(-2.3)
P 		70.9
(-1.2)
P 		116.7
(0.7)
P 		173
(3)
P 		147
B 48
(-2.8)
A 		41.6
(-3)
P 		44.1
(-2.9)
P 		71.8
(-2.1)
P 		159
(0.6)
P 		235.2
(3)
P 		194
C 58.9
(-2.5)
P 		42.2
(-2.9)
M 		37.6
(-3)
P 		56.3
(-2.5)
P 		129.9
(-0.7)
P 		277.8
(3)
P 		240
avr 44.2
(-2.8) 		38
(-3) 		41.3
(-2.9) 		66.3
(-2.1) 		135.2
(0.1) 		228.7
(3) 		191
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5564
Sequence Type Exemplar sequence
Representative Public ID B0304.4 NCBI
Target Description B0304.4 /REP_DB=WormBase Gene ID /WP=CE03872 /TR=SW:Q10933 /GB=AAK31393.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062398(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062398 NCBI Caenorhabditis elegans B0304.4 (B0304.4) mRNA, complete cds. 11/11 None
SNAP00000018304 ENSEMBL cdna:SNAP chromosome:CEL140:II:4522599:4524479:-1 11/11 None
GENEFINDER00000018310 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4522599:4523121:-1 11/11 None
B0304.4 ENSEMBL cdna:known chromosome:CEL140:II:4522599:4523121:-1 gene:B0304.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4522597-4523120(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0304.4
Entrez Gene 181918 Entrez gene
SwissProt Q10933 EMBL-EBI
WormBase CE03872 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31393 Hypothetical protein B0304.4 [Caenorhabditis elegans] ref|NP_494799.1| B0304.4 [Caenorhabditis elegans] sp|Q10933|YT24_CAEEL Hypothetical protein B0304.4 in chromosome II 8.0E-68
blast AAK31393 Hypothetical protein B0304.4 [Caenorhabditis elegans] ref|NP_494799.1| B0304.4 [Caenorhabditis elegans] sp|Q10933|YT24_CAEEL Hypothetical protein B0304.4 in chromosome II 2.0E-67
blast CAE67876 Hypothetical protein CBG13469 [Caenorhabditis briggsae] 6.0E-30
blast CAE67876 Hypothetical protein CBG13469 [Caenorhabditis briggsae] 1.0E-29
Sequence
Target Sequence 
>C. ELEGANS:187289_AT
tggacagctcgaatccatctagcctaccgctggaaaaatcttctggaaatgtgcaaaagg
gaaaactgttgaatatctggtcgaggtgcattgcccagccgtcatcatttttgggatcat
cgatttctcgtttttgggctaacgcggatatcaaaaatcgagtctgcagtgctgcaatcg
gtcgagtgaactttgtgtcaaaatgcctcaaaaagttccccgaagtatcgctcagttgca
acatcagtgccagcttatcactcaacactgggaaggaaaaagtgaagaacgaagacttgg
aaaagcaagaaaggtgccacaaggtcgctatgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACAGCTCGAATCCATCTAGCCT 563 547 14 Antisense
ATCCATCTAGCCTACCGCTGGAAAA 381 39 26 Antisense
TCTGGTCGAGGTGCATTGCCCAGCC 643 605 89 Antisense
TTGCCCAGCCGTCATCATTTTTGGG 381 701 104 Antisense
TTTTTGGGATCATCGATTTCTCGTT 377 673 121 Antisense
CAAAAATCGAGTCTGCAGTGCTGCA 561 189 165 Antisense
TGCAGTGCTGCAATCGGTCGAGTGA 427 577 178 Antisense
AAAAGTTCCCCGAAGTATCGCTCAG 248 129 224 Antisense
GCTCAGTTGCAACATCAGTGCCAGC 537 301 243 Antisense
AGTGCCAGCTTATCACTCAACACTG 117 61 259 Antisense
AAGGTGCCACAAGGTCGCTATGATA 124 159 324 Antisense
Sequence Source Affymetrix Proprietary Database