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[187288_s_at]

Description R07G3.5 /REP_DB=WormBase Gene ID /WP=CE02024 /TR=SW:Q09422 /GB=AAK31545.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 47      6grp_total > 85      4grp_total > 59      6grp_highest_sub > In      6grp_high1_sub > In      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2255
1 2 3 4 range
A 3044
(-0)
P 		3082.8
(0.1)
P 		4064.5
(3)
P 		2032.2
(-3)
P 		2032
B 3181.7
(-0.6)
P 		3460.8
(0.5)
P 		4070.6
(3)
P 		2608.6
(-3)
P 		1462
C 3213.7
(0.7)
P 		3310
(0.9)
P 		4083.5
(3)
P 		1828.7
(-3)
P 		2255
avr 3146.5
(0.1) 		3284.5
(0.5) 		4072.9
(3) 		2156.5
(-3) 		1916

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1738
1 2 3 4 5 6 range
A 2730.4
(-3)
P 		2749.5
(-2.8)
P 		2779.4
(-2.6)
P 		2972.2
(-0.9)
P 		3113.5
(0.3)
P 		3418.5
(3)
P 		688
B 2647.4
(-3)
P 		2645
(-3)
P 		3254.8
(0.4)
P 		3438.5
(1.4)
P 		3732.2
(3)
P 		3423.6
(1.3)
P 		1087
C 2373.4
(-3)
P 		2601.2
(-2.2)
P 		3116.1
(-0.4)
P 		3509.9
(0.9)
P 		3108.3
(-0.5)
P 		4110.9
(3)
P 		1738
avr 2583.7
(-3) 		2665.2
(-2.5) 		3050.1
(-0.4) 		3306.9
(1.1) 		3318
(1.1) 		3651
(3) 		1067
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1126
1 2 3 4 range
A 1108.3
(3)
P 		669.2
(-0.2)
P 		1062.5
(2.7)
P 		297.5
(-3)
P 		811
B 1014.6
(3)
P 		854.7
(0.9)
P 		943.3
(2.1)
P 		555.9
(-3)
P 		459
C 1063.8
(1.1)
P 		951.6
(0.5)
P 		1423.2
(3)
P 		308.4
(-3)
P 		1115
avr 1062.2
(2.4) 		825.2
(0.5) 		1143
(3) 		387.3
(-3) 		756

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1013
1 2 3 4 5 6 range
A 503.3
(-3)
P 		977.9
(3)
P 		605.3
(-1.7)
P 		753.8
(0.2)
P 		939.5
(2.5)
P 		832.3
(1.2)
P 		475
B 921.2
(-1.9)
P 		880.4
(-2.3)
P 		790.4
(-3)
P 		910.7
(-2)
P 		1516.4
(3)
P 		1276.6
(1)
P 		726
C 879.7
(-1.4)
P 		793.7
(-2.2)
P 		793.1
(-2.2)
P 		705.8
(-3)
P 		1005.8
(-0.3)
P 		1376.1
(3)
P 		670
avr 768.1
(-2.5) 		884
(-0.9) 		729.6
(-3) 		790.1
(-2.2) 		1153.9
(2.9) 		1161.7
(3) 		432
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187288_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5957
Sequence Type Exemplar sequence
Representative Public ID R07G3.5 NCBI
Target Description R07G3.5 /REP_DB=WormBase Gene ID /WP=CE02024 /TR=SW:Q09422 /GB=AAK31545.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063192(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063192 NCBI Caenorhabditis elegans R07G3.5 (R07G3.5) mRNA, complete cds. 10/11 None
SNAP00000041803 ENSEMBL cdna:SNAP chromosome:CEL140:II:7597606:7598674:-1 11/11 None
GENEFINDER00000041817 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7597606:7598674:-1 10/11 None
R07G3.5 ENSEMBL cdna:known chromosome:CEL140:II:7597504:7598674:-1 gene:R07G3.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7597602-7598662(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07G3.5
Entrez Gene 174231 Entrez gene
SwissProt Q09422 EMBL-EBI
WormBase CE31979 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17570.1.S1_S_AT similar to Bcl-XL-binding protein v68 cfa
CANINE_2:CFAAFFX.10177.1.S1_AT similar to Bcl-XL-binding protein v68 cfa
DROSOPHILA_2:1634489_AT dm
DROSGENOME1:151884_AT dm
U133_X3P:HS2.424437.1.S1_3P_X_AT Bcl-XL-binding protein v68 hs
U133_X3P:HS2.424437.1.S1_3P_AT Bcl-XL-binding protein v68 hs
U133_X3P:HS2.102558.1.S1_3P_AT Bcl-XL-binding protein v68 hs
HG-U133_PLUS_2:1553837_AT Bcl-XL-binding protein v68 hs
HG-U133_PLUS_2:1555943_AT Bcl-XL-binding protein v68 hs
HG-U95E:88475_AT Bcl-XL-binding protein v68 hs
MG-U74BV2:114324_AT RIKEN cDNA 2610528A17 gene mm
MOE430A:1428080_AT RIKEN cDNA 2610528A17 gene mm
MOUSE430A_2:1428080_AT RIKEN cDNA 2610528A17 gene mm
MOUSE430_2:1428080_AT RIKEN cDNA 2610528A17 gene mm
MG-U74CV2:168853_I_AT RIKEN cDNA 2610528A17 gene (2610528A17Rik), mRNA mm
MU19KSUBB:TC30932_AT RIKEN cDNA 2610528A17 gene (2610528A17Rik), mRNA mm
RAE230B:1391577_AT similar to hypothetical protein MGC5352 (predicted) rn
RAT230_2:1391577_AT similar to hypothetical protein MGC5352 (predicted) rn
RAE230B:1378382_AT Similar to hypothetical protein MGC5352 (predicted) rn
RAT230_2:1378382_AT Similar to hypothetical protein MGC5352 (predicted) rn
RG-U34C:RC_AI230014_AT Similar to hypothetical protein MGC5352 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK31545 Hypothetical protein R07G3.5 [Caenorhabditis elegans] ref|NP_495593.2| R07G3.5 [Caenorhabditis elegans] sp|Q09422|YRO5_CAEEL Hypothetical protein R07G3.5 in chromosome II 1.0E-151
blast AAK31545 Hypothetical protein R07G3.5 [Caenorhabditis elegans] ref|NP_495593.2| R07G3.5 [Caenorhabditis elegans] sp|Q09422|YRO5_CAEEL Hypothetical protein R07G3.5 in chromosome II 1.0E-139
blast CAE67496 Hypothetical protein CBG13006 [Caenorhabditis briggsae] 1.0E-119
blast CAE67496 Hypothetical protein CBG13006 [Caenorhabditis briggsae] 1.0E-117
blast XP_793164 PREDICTED: similar to CG14816-PA [Strongylocentrotus purpuratus] 3.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR001345 EMBL-EBI Phosphoglycerate/bisphosphoglycerate mutase 8.3E-5
Pfam IPR001345 EMBL-EBI Phosphoglycerate/bisphosphoglycerate mutase 8.3E-5
Sequence
Target Sequence 
>C. ELEGANS:187288_S_AT
ccgtgatccaattagccttgtcgataaaggaaagtgggaaaaagctgacgaagaaggcaa
aaagaaactgatcgaagagaagaaagctacggcaacgagaaacattttcctcattcgtca
tgggcgtgaacaagccgaattattggggaaaagacttgcaaactcggatatcaaatttac
aaacatgactatgtcgactatggttcgtgccaccgaaactgccaacatcatcttgaagca
ccttcctgatgatcttacccgcacatcctcaccgtttattgaggaaggaccaccataccc
accagtgccagatcataaaacatggaggcctctagatccagagttctacacggaagccgc
cagaatcgaatcagcctaccgcaaaatattccatcgtgcttccccgtcacaaaaagaaga
ctcattcgaacttattgtatgccatgcgaacgtcattcggtatttcatctgcagagctct
acaatttccaccagagggctggctccgtatgtcgctaggaaactgttcgttgacatggat
cactattcgtccaaaaggacatgtttctgttcgttccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGTGATCCAATTAGCCTTGTCGAT 43 265 198 Antisense
TTTCCTCATTCGTCATGGGCGTGAA 123 669 303 Antisense
TATGTCGACTATGGTTCGTGCCACC 510 655 387 Antisense
TGAAGCACCTTCCTGATGATCTTAC 547 573 431 Antisense
ATTGAGGAAGGACCACCATACCCAC 159 3 475 Antisense
CATACCCACCAGTGCCAGATCATAA 16 213 491 Antisense
GAAGCCGCCAGAATCGAATCAGCCT 209 345 550 Antisense
GCAAAATATTCCATCGTGCTTCCCC 380 319 578 Antisense
CGTCATTCGGTATTTCATCTGCAGA 299 247 648 Antisense
CTGGCTCCGTATGTCGCTAGGAAAC 410 239 696 Antisense
AAGGACATGTTTCTGTTCGTTCCAT 651 159 752 Antisense
Sequence Source Affymetrix Proprietary Database