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[187287_at]

Description Y110A2AL.5 /REP_DB=WormBase Gene ID /WP=CE25193 /TR=Q9N4A0 /GB=AAF60403.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 63      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6
(-0.3)
A 		4.2
(-2.4)
A 		8.8
(3)
A 		3.7
(-3)
A 		5
B 3.5
(2.6)
A 		3.2
(1.3)
A 		2.2
(-3)
A 		3.6
(3)
A 		1
C 2.8
(-3)
A 		2.9
(-1.8)
A 		2.8
(-3)
A 		3.3
(3)
A 		1
avr 4.1
(0.5) 		3.4
(-3) 		4.6
(3) 		3.5
(-2.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.5
(-2.8)
A 		2
(-3)
A 		7.3
(-0.5)
A 		2.4
(-2.8)
A 		14.6
(3)
A 		8.6
(0.1)
A 		13
B 5.8
(2.4)
A 		2.5
(-3)
A 		2.5
(-3)
A 		3.3
(-1.7)
A 		6.2
(3)
A 		4.8
(0.7)
A 		4
C 6.2
(-1.1)
A 		5
(-1.7)
A 		2.3
(-3)
A 		12.1
(1.7)
A 		14.9
(3)
A 		3.4
(-2.5)
A 		13
avr 4.8
(-1.9) 		3.2
(-3) 		4
(-2.4) 		5.9
(-1.1) 		11.9
(3) 		5.6
(-1.3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.2
(2.7)
A 		0.9
(-1.7)
A 		2.3
(3)
A 		0.5
(-3)
A 		2
B 1.1
(3)
A 		0.8
(0)
A 		0.5
(-3)
A 		0.8
(0)
A 		1
C 0.9
(1.5)
A 		0.8
(0)
A 		1
(3)
A 		0.6
(-3)
A 		0
avr 1.4
(3) 		0.8
(-1.5) 		1.3
(2.3) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-2.7)
A 		1.6
(-1.3)
A 		0.6
(-2.8)
A 		4.4
(3)
A 		2.1
(-0.5)
A 		4
B 2
(1.4)
A 		0.8
(-2.4)
A 		0.6
(-3)
A 		0.9
(-2.1)
A 		2.5
(3)
A 		1.8
(0.8)
A 		2
C 2.3
(-0.6)
A 		1.5
(-1.7)
A 		0.6
(-3)
A 		2.4
(-0.4)
A 		4.8
(3)
A 		1.1
(-2.3)
A 		4
avr 1.6
(-1.6) 		1
(-2.8) 		0.9
(-3) 		1.3
(-2.2) 		3.9
(3) 		1.7
(-1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187287_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5041
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.5 NCBI
Target Description Y110A2AL.5 /REP_DB=WormBase Gene ID /WP=CE25193 /TR=Q9N4A0 /GB=AAF60403.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061984(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061984 NCBI Caenorhabditis elegans Y110A2AL.5 (Y110A2AL.5) mRNA, complete cds. 11/11 None
SNAP00000036285 ENSEMBL cdna:SNAP chromosome:CEL140:II:2864528:2865863:1 11/11 None
GENEFINDER00000036303 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2864528:2865804:1 11/11 None
Y110A2AL.5 ENSEMBL cdna:known chromosome:CEL140:II:2864528:2865362:1 gene:Y110A2AL.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2864526-2865361(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AL.5
Entrez Gene 190936 Entrez gene
SwissProt Q9N4A0 EMBL-EBI
WormBase CE25193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60403 Hypothetical protein Y110A2AL.5 [Caenorhabditis elegans] ref|NP_494385.1| Y110A2AL.5 [Caenorhabditis elegans] 1.0E-145
blast CAE72418 Hypothetical protein CBG19580 [Caenorhabditis briggsae] 3.0E-26
blast CAE72418 Hypothetical protein CBG19580 [Caenorhabditis briggsae] 5.0E-26
blast CAB05192 Hypothetical protein F38C2.6 [Caenorhabditis elegans] ref|NP_502932.1| F38C2.6 [Caenorhabditis elegans] 9.0E-11
blast CAE57178 Hypothetical protein CBG00017 [Caenorhabditis briggsae] 2.0E-10
Sequence
Target Sequence 
>C. ELEGANS:187287_AT
gacctttaattgtacggctgcctgcgccaacgacactgaatgtattctggcctactggga
tagtgataacaagtgcgtcaactacaagtattcggaatttgatggtggtaacaatatcaa
agtggatctttcatccaaggagttcaaagtggcgatcaagaccaataaaatcgatcaatg
cccatcagataccacccccttcggcaattatccttatatggacatccgtaacggagccaa
cttggcctatgaatgggtccctagtgggaacgagctgaccctggtgaatccttgccccgc
tcctggacagccattcagacgcactgagtctctagtggtttgcatttggacttttaatga
aacagttgcgactcgagaagaggctaagacattctgtattggcaagggcctgaaactcac
tggcattgctaataaagatgagatactagcactgggaggagtgtgcttagataaagaaag
gtgttgggttgatggatacgctcccagctgtactacaggaagttgcactgcgtcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCTTTAATTGTACGGCTGCCTGC 207 383 147 Antisense
AATGTATTCTGGCCTACTGGGATAG 280 163 185 Antisense
TCGATCAATGCCCATCAGATACCAC 527 603 317 Antisense
CCCCCTTCGGCAATTATCCTTATAT 693 259 341 Antisense
CATCCGTAACGGAGCCAACTTGGCC 212 1 369 Antisense
AACTTGGCCTATGAATGGGTCCCTA 146 137 385 Antisense
GGGAACGAGCTGACCCTGGTGAATC 464 493 412 Antisense
GACAGCCATTCAGACGCACTGAGTC 381 367 452 Antisense
GAGTCTCTAGTGGTTTGCATTTGGA 50 399 472 Antisense
GGGCCTGAAACTCACTGGCATTGCT 386 491 552 Antisense
CTACAGGAAGTTGCACTGCGTCGCA 7 227 659 Antisense
Sequence Source Affymetrix Proprietary Database