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[187286_at]

Description F07F6.1 /REP_DB=WormBase Gene ID /WP=CE01894 /TR=SW:Q09302 /GB=AAC46775.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 2
(-3)
A 		31.5
(2.4)
A 		9.3
(-1.7)
A 		35
(3)
A 		33
B 12
(-1.2)
A 		4.1
(-3)
A 		30.7
(3)
A 		22.1
(1.1)
A 		27
C 30.6
(3)
A 		4.1
(-2.7)
A 		2.8
(-3)
A 		30.6
(3)
A 		28
avr 14.9
(-2.4) 		13.2
(-3) 		14.3
(-2.6) 		29.2
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 6.4
(-2.9)
A 		2.5
(-3)
A 		14.7
(-2.6)
A 		28.7
(-2.1)
A 		135.9
(1.5)
P 		180.7
(3)
P 		178
B 2.5
(-3)
A 		11.7
(-2.7)
A 		3
(-3)
A 		2.9
(-3)
A 		89
(-0.1)
P 		180.8
(3)
P 		178
C 3.8
(-3)
A 		5.4
(-3)
A 		6.7
(-2.9)
A 		40
(-2)
A 		96.9
(-0.5)
P 		228.9
(3)
P 		225
avr 4.2
(-3) 		6.5
(-2.9) 		8.1
(-2.9) 		23.9
(-2.4) 		107.3
(0.2) 		196.8
(3) 		193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.7
(-3)
A 		6.8
(3)
A 		2.4
(-1.3)
A 		5.1
(1.3)
A 		6
B 3.8
(-0.2)
A 		1
(-3)
A 		7.1
(3)
A 		4.7
(0.6)
A 		6
C 10.1
(3)
A 		1.2
(-2.9)
A 		1
(-3)
A 		5.2
(-0.2)
A 		9
avr 4.9
(2.7) 		3
(-3) 		3.5
(-1.5) 		5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 1.2
(-3)
A 		0.9
(-3)
A 		3.2
(-2.7)
A 		7.3
(-2.1)
A 		41
(2.6)
P 		44
(3)
P 		43
B 0.9
(-3)
A 		3.9
(-2.7)
A 		0.7
(-3)
A 		0.8
(-3)
A 		36.2
(0.2)
P 		67.4
(3)
P 		67
C 1.4
(-3)
A 		1.7
(-3)
A 		1.7
(-3)
A 		8
(-2.5)
A 		31.3
(-0.6)
P 		76.6
(3)
P 		75
avr 1.2
(-3) 		2.2
(-2.9) 		1.9
(-2.9) 		5.4
(-2.6) 		36.2
(0.4) 		62.7
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4224
Sequence Type Exemplar sequence
Representative Public ID F07F6.1 NCBI
Target Description F07F6.1 /REP_DB=WormBase Gene ID /WP=CE01894 /TR=SW:Q09302 /GB=AAC46775.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062631(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062631 NCBI Caenorhabditis elegans F07F6.1 (F07F6.1) mRNA, complete cds. 11/11 None
SNAP00000006561 ENSEMBL cdna:SNAP chromosome:CEL140:II:5437873:5440021:1 11/11 None
GENEFINDER00000006571 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5437873:5440021:1 11/11 None
F07F6.1 ENSEMBL cdna:known chromosome:CEL140:II:5437861:5440217:1 gene:F07F6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5437870-5440019(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07F6.1
Entrez Gene 173928 Entrez gene
SwissProt Q09302 EMBL-EBI
WormBase CE01894 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46775 Hypothetical protein F07F6.1 [Caenorhabditis elegans] ref|NP_495032.1| F07F6.1 [Caenorhabditis elegans] sp|Q09302|YQP1_CAEEL Hypothetical protein F07F6.1 in chromosome III 0.0
blast CAE59105 Hypothetical protein CBG02400 [Caenorhabditis briggsae] 1.0E-173
blast CAE59135 Hypothetical protein CBG02436 [Caenorhabditis briggsae] 1.0E-123
Sequence
Target Sequence 
>C. ELEGANS:187286_AT
accgttcttcaatcgatgcgcaatcttttcacatgtaaagttcaatcagagctgtcatcg
atgttcatcagtgatgcactggcacaatggccaactggactcattcgtatttttaatagg
aacgtgaaagttgtttcaaacacaatgtgtctttcgtcgagttcttattatactcagaga
attcatgattctgcattggaaggtggttgctcggtgcacagaaactcgtgggagccaact
gttccggatgatattcgcagtgaagttcaattgatccaatacacgaactcatttcttgga
cactttggaccacaaaacattgatgttgatattcccatccgtatcctggctcaatcgttg
cgtggaacttggccaaagactggaccaaaacttgctgctctactcactgaaatctcgtct
ggattcgttctcatcaatcgtgtcctctacttgtctagcaatctgcatcaccatgaaaaa
atcattgacaatttggcttgtttccaagacgactgtactgatgtctattttcttccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGTTCTTCAATCGATGCGCAATC 432 89 706 Antisense
TGGCCAACTGGACTCATTCGTATTT 524 543 793 Antisense
CACAATGTGTCTTTCGTCGAGTTCT 36 195 846 Antisense
AAACTCGTGGGAGCCAACTGTTCCG 259 127 927 Antisense
CGAACTCATTTCTTGGACACTTTGG 188 253 989 Antisense
TATCCTGGCTCAATCGTTGCGTGGA 520 657 1047 Antisense
AGACTGGACCAAAACTTGCTGCTCT 453 71 1082 Antisense
TTGCTGCTCTACTCACTGAAATCTC 222 703 1097 Antisense
GAAATCTCGTCTGGATTCGTTCTCA 142 363 1114 Antisense
TGTCCTCTACTTGTCTAGCAATCTG 593 557 1146 Antisense
GTACTGATGTCTATTTTCTTCCGTT 618 459 1220 Antisense
Sequence Source Affymetrix Proprietary Database