[Home] | [Total List]

[187285_at]

Description C02F5.6 /REP_DB=WormBase Gene ID /WP=CE00042 /TR=SW:P34283 /GB=AAA27921.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 94      6grp_highest_nonorm > 92      6grp_total > 85      4grp_total > 09      6grp_highest_sub > In      6grp_high1_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 120.6
(-3)
P
136.8
(-2.1)
A
132.5
(-2.3)
A
225.9
(3)
P
105
B 108.1
(-3)
P
139.1
(-1.5)
A
128.9
(-2)
A
228.4
(3)
P
120
C 96.1
(-3)
P
118
(-2.2)
A
129.1
(-1.8)
P
261
(3)
P
165
avr 108.3
(-3)
131.3
(-1.9)
130.2
(-2)
238.4
(3)
130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 154.7
(-3)
P
172
(-2.7)
P
211.5
(-1.9)
P
294.5
(-0.4)
P
345.6
(0.6)
P
475.5
(3)
P
321
B 159.7
(-3)
P
210.2
(-1.8)
P
254.1
(-0.7)
P
344.5
(1.4)
P
411.2
(3)
P
387.8
(2.4)
P
252
C 154.7
(-2.7)
P
139.1
(-3)
P
222.7
(-1.4)
P
452.1
(3)
P
234.6
(-1.2)
P
413.6
(2.3)
P
313
avr 156.4
(-3)
173.8
(-2.6)
229.4
(-1.4)
363.7
(1.6)
330.5
(0.9)
425.6
(3)
269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 43.9
(3)
P
29.7
(-3)
A
34.6
(-0.9)
A
33.1
(-1.6)
P
14
B 34.5
(-1.5)
P
34.3
(-1.6)
A
29.9
(-3)
A
48.7
(3)
P
19
C 31.8
(-3)
P
33.9
(-2)
A
45
(3)
P
44
(2.5)
P
13
avr 36.7
(-0.4)
32.6
(-3)
36.5
(-0.5)
41.9
(3)
9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 28.5
(-3)
P
61.2
(-0.8)
P
46.1
(-1.8)
P
74.7
(0.2)
P
104.3
(2.2)
P
115.8
(3)
P
87
B 55.6
(-3)
P
70
(-2.2)
P
61.7
(-2.7)
P
91.2
(-1.1)
P
167.1
(3)
P
144.6
(1.8)
P
112
C 57.3
(-2.1)
P
42.4
(-3)
P
56.7
(-2.1)
P
90.9
(0)
P
75.9
(-0.9)
P
138.5
(3)
P
96
avr 47.1
(-3)
57.9
(-2.2)
54.8
(-2.5)
85.6
(-0.3)
115.8
(1.8)
133
(3)
86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187285_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6802
Sequence Type Exemplar sequence
Representative Public ID C02F5.6 NCBI
Target Description C02F5.6 /REP_DB=WormBase Gene ID /WP=CE00042 /TR=SW:P34283 /GB=AAA27921.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171212(11), NM_171213(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_171212 NCBI Caenorhabditis elegans C02F5.6b (C02F5.6) mRNA, complete cds. 11/11 None
NM_171213 NCBI Caenorhabditis elegans C02F5.6a (C02F5.6) mRNA, complete cds. 11/11 None
SNAP00000031502 ENSEMBL cdna:SNAP chromosome:CEL140:III:8232574:8234244:1 11/11 None
GENEFINDER00000031516 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8232574:8234387:1 11/11 None
C02F5.6b ENSEMBL cdna:known chromosome:CEL140:III:8232574:8234450:1 gene:C02F5.6 11/11 None
C02F5.6a ENSEMBL cdna:known chromosome:CEL140:III:8232574:8234244:1 gene:C02F5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8232569-8234240(+) 100.0 100.0
Public Domain and Genome References
Ensembl C02F5.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM15539 Hypothetical protein C02F5.6b [Caenorhabditis elegans] ref|NP_741250.1| C02F5.6b [Caenorhabditis elegans] sp|P34283|YKK6_CAEEL Hypothetical protein C02F5.6 in chromosome III 0.0
blast AAA27921 Hypothetical protein C02F5.6a [Caenorhabditis elegans] ref|NP_741251.1| C02F5.6a [Caenorhabditis elegans] 0.0
blast CAE70184 Hypothetical protein CBG16658 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence
>C. ELEGANS:187285_AT
tggaagtcgttgaacacatccctcttccaaatgcgaaaaaatttgtcgaaaatgttctgg
ggactttgatgccacgcattttcattttttctacgccaaatcatgaatataatgcagtat
ttggaatggagcctggcgagtttcgacatggcgatcataaatttgagatgaataggaaag
agttctcgaattggctggaagagctttcaattcgttttccgcattatcaaatcgatccac
cacattacatcggaatgacacgtggctacgagaatctcagtggtgcttctcaggctgcag
tatgtcgcctccaagtagatctcaacacaactcttccgcaagaagttacaccatacgaaa
tggttgggcacttgccgtgcagattgggatcccgattgattgcttataatcttgtgaaag
aagcttttttggattggttggaaaagattgagcttcaagagcacgaaccgagaacggacg
gctactctc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
TGGAAGTCGTTGAACACATCCCTCT 202 547 659 Antisense
CACATCCCTCTTCCAAATGCGAAAA 145 197 673 Antisense
GTTCTGGGGACTTTGATGCCACGCA 182 441 712 Antisense
TGATGCCACGCATTTTCATTTTTTC 425 565 725 Antisense
GGAGCCTGGCGAGTTTCGACATGGC 590 511 786 Antisense
AAGAGCTTTCAATTCGTTTTCCGCA 503 153 857 Antisense
AGAATCTCAGTGGTGCTTCTCAGGC 417 75 929 Antisense
TCTCAGGCTGCAGTATGTCGCCTCC 363 613 946 Antisense
TGTCGCCTCCAAGTAGATCTCAACA 163 557 961 Antisense
ATGGTTGGGCACTTGCCGTGCAGAT 412 51 1018 Antisense
GAACCGAGAACGGACGGCTACTCTC 381 345 1123 Antisense
Sequence Source Affymetrix Proprietary Database