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[187284_at]

Description C34C12.7 /REP_DB=WormBase Gene ID /WP=CE01515 /TR=SW:Q09271 /GB=CAA87098.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 94      4grp_highest_8_8 > 11      4grp_high_8_8 > 47      6grp_total > 84      4grp_total > 40      6grp_high1_sub > In      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 163.2
(-3)
P 		435.3
(0.8)
P 		596
(3)
P 		443.7
(0.9)
P 		433
B 158.8
(-3)
P 		432.4
(2.4)
P 		462.1
(3)
P 		290.3
(-0.4)
P 		303
C 136.8
(-3)
P 		498.1
(1.7)
P 		597.6
(3)
P 		200.2
(-2.2)
P 		461
avr 152.9
(-3) 		455.3
(1.5) 		551.9
(3) 		311.4
(-0.6) 		399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 304
1 2 3 4 5 6 range
A 153.5
(-3)
A 		238.1
(-0.8)
P 		268.3
(0)
P 		383.1
(3)
P 		347.6
(2.1)
P 		325.9
(1.5)
P 		230
B 144.1
(-3)
M 		201.7
(-1.6)
P 		294.9
(0.5)
P 		297.7
(0.6)
P 		399.3
(3)
P 		348.8
(1.8)
P 		255
C 121.5
(-3)
P 		267.4
(-0.1)
P 		305.4
(0.6)
P 		323.8
(1)
P 		425.3
(3)
P 		356.1
(1.6)
P 		304
avr 139.7
(-3) 		235.7
(-0.7) 		289.5
(0.6) 		334.9
(1.7) 		390.7
(3) 		343.6
(1.9) 		251
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 59.4
(-3)
P 		94.5
(-0.8)
P 		155.8
(3)
P 		64.9
(-2.7)
P 		96
B 50.6
(-3)
P 		106.8
(3)
P 		107.1
(3)
P 		61.9
(-1.8)
P 		57
C 45.3
(-2.6)
P 		143.2
(0.8)
P 		208.3
(3)
P 		33.8
(-3)
P 		175
avr 51.8
(-3) 		114.8
(0.6) 		157.1
(3) 		53.5
(-2.9) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 28.3
(-3)
A 		84.7
(1.4)
P 		58.4
(-0.6)
P 		97.2
(2.4)
P 		104.9
(3)
P 		79.3
(1)
P 		77
B 50.1
(-3)
M 		67.1
(-2.1)
P 		71.6
(-1.8)
P 		78.8
(-1.5)
P 		162.2
(3)
P 		130.1
(1.3)
P 		112
C 45
(-3)
P 		81.6
(-0.6)
P 		77.7
(-0.9)
P 		65.1
(-1.7)
P 		137.6
(3)
P 		119.2
(1.8)
P 		93
avr 41.1
(-3) 		77.8
(-0.7) 		69.2
(-1.2) 		80.4
(-0.5) 		134.9
(3) 		109.5
(1.4) 		94
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6960
Sequence Type Exemplar sequence
Representative Public ID C34C12.7 NCBI
Target Description C34C12.7 /REP_DB=WormBase Gene ID /WP=CE01515 /TR=SW:Q09271 /GB=CAA87098.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065317 NCBI Caenorhabditis elegans C34C12.7 (C34C12.7) mRNA, complete cds. 11/11 None
GENEFINDER00000028584 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3484844:3486091:-1 11/11 None
C34C12.7 ENSEMBL cdna:known chromosome:CEL140:III:3484844:3486025:-1 gene:C34C12.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028575 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3484843-3486025(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34C12.7
Entrez Gene 183201 Entrez gene
SwissProt Q09271 EMBL-EBI
WormBase CE01515 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87098 Hypothetical protein C34C12.7 [Caenorhabditis elegans] ref|NP_497718.1| C34C12.7 [Caenorhabditis elegans] sp|Q09271|YQF7_CAEEL Hypothetical protein C34C12.7 in chromosome III 1.0E-99
blast CAE64953 Hypothetical protein CBG09784 [Caenorhabditis briggsae] 8.0E-84
blast CAE64953 Hypothetical protein CBG09784 [Caenorhabditis briggsae] 3.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 1.2E-5
Sequence
Target Sequence 
>C. ELEGANS:187284_AT
gacacgccaggaacctttactgtcaactttttccgcaacatttgtgtggacccaccagat
gcggaaggagtggaccggtttgaagctcgccttcagggttataaaggtggagaaggaatc
atcgaatttgcgcaggcagtggggaaaaatactcaagtgatggtggttatttctgggctc
aaagaaaattcgctctacgagatcaatttcctgcctgacacgaaagagaaaggtggtcag
tgccaccggaaatcgcgggtaaatggtgagggaaagactctgatgatcgtagaaacagat
catactggtatggcagttgaaccatggaaggttattgatttcgatgggtttgaagagaat
gtgattagcaagacaatagtcgtcgttgaaaagtcaactcaaacaatagtggattgcggg
tcaattcgtcttgcaactgcttcttcaaactcatcaacaacacgaacttcatcctcaaca
gggcttaaattcacaacgggtcttctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACGCCAGGAACCTTTACTGTCA 505 365 91 Antisense
TCCGCAACATTTGTGTGGACCCACC 14 595 122 Antisense
TGGACCCACCAGATGCGGAAGGAGT 217 547 137 Antisense
AGGAGTGGACCGGTTTGAAGCTCGC 300 55 156 Antisense
GAATCATCGAATTTGCGCAGGCAGT 656 327 206 Antisense
AGTGATGGTGGTTATTTCTGGGCTC 23 61 246 Antisense
GCTCTACGAGATCAATTTCCTGCCT 242 301 282 Antisense
TCAGTGCCACCGGAAATCGCGGGTA 689 623 327 Antisense
TGCGGGTCAATTCGTCTTGCAACTG 55 553 505 Antisense
CGAACTTCATCCTCAACAGGGCTTA 327 251 553 Antisense
GCTTAAATTCACAACGGGTCTTCTC 549 303 573 Antisense
Sequence Source Affymetrix Proprietary Database