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[187283_at]

Description Y110A2AL.7 /REP_DB=WormBase Gene ID /WP=CE23221 /TR=Q9N4A2 /GB=AAF60398.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 09      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 37
(-1.9)
A 		20.7
(-3)
A 		59.5
(-0.4)
A 		109.4
(3)
A 		89
B 27.5
(-3)
A 		45.7
(0.3)
A 		28.9
(-2.7)
A 		60.3
(3)
A 		33
C 41.1
(-3)
A 		45.4
(-2.6)
A 		41.5
(-3)
A 		98.8
(3)
P 		58
avr 35.2
(-3) 		37.3
(-2.8) 		43.3
(-2.1) 		89.5
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 25.6
(-1.9)
A 		31
(-1)
A 		44.3
(1.2)
A 		55
(3)
A 		30.2
(-1.1)
A 		18.7
(-3)
A 		36
B 25.3
(-2.9)
A 		32.8
(-1.8)
A 		67.8
(3)
A 		26
(-2.8)
A 		24.5
(-3)
A 		27.7
(-2.6)
A 		43
C 31.9
(0.4)
A 		31.5
(0.3)
A 		54.1
(3)
A 		3.6
(-3)
A 		34.3
(0.6)
A 		44.4
(1.8)
A 		51
avr 27.6
(-3) 		31.8
(-2.1) 		55.4
(3) 		28.2
(-2.9) 		29.7
(-2.5) 		30.3
(-2.4) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.5
(1.7)
A 		4.5
(-3)
A 		15.6
(2.8)
A 		16
(3)
A 		12
B 8.8
(-1)
A 		11.3
(1.5)
A 		6.7
(-3)
A 		12.9
(3)
A 		6
C 13.6
(-2)
A 		13
(-3)
A 		14.5
(-0.6)
A 		16.7
(3)
P 		4
avr 12
(-0.4) 		9.6
(-3) 		12.3
(-0.1) 		15.2
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 4.7
(-2.9)
A 		11
(1.1)
A 		9.6
(0.2)
A 		14
(3)
A 		9.1
(-0.1)
A 		4.6
(-3)
A 		9
B 8.8
(-1.8)
A 		10.9
(-0.5)
A 		16.5
(3)
A 		6.9
(-3)
A 		9.9
(-1.1)
A 		10.3
(-0.9)
A 		10
C 11.8
(1.7)
A 		9.6
(0.8)
A 		13.8
(2.5)
A 		0.7
(-3)
A 		11.1
(1.4)
A 		14.9
(3)
A 		14
avr 8.4
(-1.8) 		10.5
(0.2) 		13.3
(3) 		7.2
(-3) 		10
(-0.2) 		9.9
(-0.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4661
Sequence Type Exemplar sequence
Representative Public ID Y110A2AL.7 NCBI
Target Description Y110A2AL.7 /REP_DB=WormBase Gene ID /WP=CE23221 /TR=Q9N4A2 /GB=AAF60398.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061981(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061981 NCBI Caenorhabditis elegans Y110A2AL.7 (Y110A2AL.7) mRNA, complete cds. 11/11 None
SNAP00000036280 ENSEMBL cdna:SNAP chromosome:CEL140:II:2842607:2843187:-1 11/11 None
GENEFINDER00000036296 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2842607:2843187:-1 11/11 None
Y110A2AL.7 ENSEMBL cdna:known chromosome:CEL140:II:2842607:2843187:-1 gene:Y110A2AL.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2842605-2843186(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A2AL.7
Entrez Gene 190938 Entrez gene
SwissProt Q9N4A2 EMBL-EBI
WormBase CE23221 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60398 Hypothetical protein Y110A2AL.7 [Caenorhabditis elegans] ref|NP_494382.1| Y110A2AL.7 [Caenorhabditis elegans] 9.0E-90
blast AAO38587 Hypothetical protein Y110A2AL.4b [Caenorhabditis elegans] ref|NP_872032.1| Y110A2AL.4b [Caenorhabditis elegans] 1.0E-48
blast AAO38586 Hypothetical protein Y110A2AL.4a [Caenorhabditis elegans] ref|NP_494380.2| Y110A2AL.4a [Caenorhabditis elegans] 1.0E-48
Sequence
Target Sequence 
>C. ELEGANS:187283_AT
atttctcatcgtcaactccgatgctcaacggtttggttcggccagatatatgctccaaca
ccacctcgacgtcttccaacaatttgttgacgccggaaacaagaagtggctgagagtgat
gatgccagtgaagcataattccgatcaagaactagatgacttcatcaaggctcacaagtc
gatgaagttgacggcaaaaagtgcaaagtacagcggcactggtaatagccagtctggcat
ctccggagtggtggagtacgcgagaggaggcgccactattctgcttgaaatggttattga
gaagaatcgctccagtctatcttcttacatgttcacaagtgtcaggccagtatcagtccc
atcccaacgtaatttccatgtttgtcttgtgggattcctctggtgctacctctggcttgt
tgatgtta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCTCATCGTCAACTCCGATGCT 282 15 39 Antisense
CGATGCTCAACGGTTTGGTTCGGCC 625 247 57 Antisense
GGTTCGGCCAGATATATGCTCCAAC 78 507 73 Antisense
AATAGCCAGTCTGGCATCTCCGGAG 408 173 262 Antisense
GGAGTACGCGAGAGGAGGCGCCACT 163 515 291 Antisense
GGCGCCACTATTCTGCTTGAAATGG 365 541 307 Antisense
TGAGAAGAATCGCTCCAGTCTATCT 357 569 336 Antisense
CAGTCTATCTTCTTACATGTTCACA 624 207 351 Antisense
CAAGTGTCAGGCCAGTATCAGTCCC 172 185 374 Antisense
CATGTTTGTCTTGTGGGATTCCTCT 537 209 415 Antisense
TGCTACCTCTGGCTTGTTGATGTTA 3 581 442 Antisense
Sequence Source Affymetrix Proprietary Database