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[187282_at]

Description F22B7.9 /REP_DB=WormBase Gene ID /WP=CE00162 /TR=SW:P34412 /GB=AAA65465.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 92      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 49      6grp_total > 94      4grp_total > 04      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8940
1 2 3 4 range
A 3836
(-1.7)
P
2131.6
(-3)
P
2126.8
(-3)
P
10140.8
(3)
P
8014
B 4130.6
(-1.4)
P
1850.5
(-3)
P
2257.1
(-2.7)
P
10309
(3)
P
8459
C 3894.9
(-1.5)
P
1643.5
(-3)
P
1996.7
(-2.8)
P
10583.6
(3)
P
8940
avr 3953.8
(-1.5)
1875.2
(-3)
2126.9
(-2.8)
10344.5
(3)
8469

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6375
1 2 3 4 5 6 range
A 2145.9
(-3)
P
4695.9
(-0.3)
P
4775.8
(-0.3)
P
6042.3
(1.1)
P
7890.4
(3)
P
6577.9
(1.6)
P
5745
B 2073.6
(-3)
P
4352.7
(-0.6)
P
4279.3
(-0.6)
P
6088.4
(1.3)
P
7676.7
(3)
P
5925.3
(1.1)
P
5603
C 1968.7
(-3)
P
4032.2
(-1.1)
P
4739.1
(-0.4)
P
5840.5
(0.6)
P
8343.9
(3)
P
6283
(1.1)
P
6375
avr 2062.7
(-3)
4360.3
(-0.7)
4598.1
(-0.4)
5990.4
(1)
7970.3
(3)
6262.1
(1.3)
5908
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1740
1 2 3 4 range
A 1396.7
(2.5)
P
462.7
(-3)
P
556
(-2.5)
P
1484.4
(3)
P
1022
B 1317.2
(-0)
P
457
(-3)
P
523
(-2.8)
P
2196.9
(3)
P
1740
C 1289.3
(0.7)
P
472.5
(-3)
P
695.9
(-2)
P
1784.6
(3)
P
1312
avr 1334.4
(0.8)
464.1
(-3)
591.6
(-2.4)
1822
(3)
1358

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2723
1 2 3 4 5 6 range
A 395.6
(-3)
P
1670.1
(0.9)
P
1040.1
(-1.1)
P
1532.5
(0.4)
P
2381
(3)
P
1601.5
(0.6)
P
1985
B 721.5
(-3)
P
1448.8
(-1.2)
P
1039.2
(-2.2)
P
1612.6
(-0.8)
P
3118.9
(3)
P
2209.5
(0.7)
P
2397
C 729.7
(-3)
P
1230.3
(-1.5)
P
1206.2
(-1.5)
P
1174.5
(-1.6)
P
2700
(3)
P
2103.3
(1.2)
P
1970
avr 615.6
(-3)
1449.7
(-0.6)
1095.2
(-1.6)
1439.9
(-0.7)
2733.3
(3)
1971.4
(0.8)
2118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187282_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6951
Sequence Type Exemplar sequence
Representative Public ID F22B7.9 NCBI
Target Description F22B7.9 /REP_DB=WormBase Gene ID /WP=CE00162 /TR=SW:P34412 /GB=AAA65465.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066507(10)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_066507 NCBI Caenorhabditis elegans F22B7.9 (F22B7.9) mRNA, complete cds. 10/11 None
GENEFINDER00000003842 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8652606:8654322:-1 11/11 None
F22B7.9 ENSEMBL cdna:known chromosome:CEL140:III:8652477:8653809:-1 gene:F22B7.9 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003837 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8652600-8653791(-) 96.89 100.0
Public Domain and Genome References
Gene Title
Ensembl F22B7.9
Entrez Gene 176213 Entrez gene
SwissProt P34412 EMBL-EBI
WormBase CE29771 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast S44630 f22b7.9 protein - Caenorhabditis elegans 1.0E-168
blast AAA65465 Hypothetical protein F22B7.9 [Caenorhabditis elegans] ref|NP_498908.2| F22B7.9 [Caenorhabditis elegans] sp|P34412|YLW9_CAEEL Hypothetical protein F22B7.9 in chromosome III 1.0E-139
blast S44630 f22b7.9 protein - Caenorhabditis elegans 1.0E-134
blast AAA65465 Hypothetical protein F22B7.9 [Caenorhabditis elegans] ref|NP_498908.2| F22B7.9 [Caenorhabditis elegans] sp|P34412|YLW9_CAEEL Hypothetical protein F22B7.9 in chromosome III 1.0E-134
blast CAE75028 Hypothetical protein CBG22935 [Caenorhabditis briggsae] 1.0E-124
blast CAE75028 Hypothetical protein CBG22935 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence
>C. ELEGANS:187282_AT
atcggattcgtaactggactcccatcagtatatgctttcgaaaatggagcagaagaaatt
gcaatgcacacaatggataagactagtttggagctttactgtcgtccaacacttaagaga
aataatattccaatgatcaagaccaaggtttcatgtggtacaattgaagaggcaatgaag
ttccttggcggaaaaaaattcgacatcattttggcaccagatcttctaaaccggcaagaa
gcagaatttgatttggttcacgaaattctgcaccaaggactctcgtatgatggaatttgt
ctcttctcctgccgcacacactacgcaaacgttgacgggtcgttgaccgccttcttacaa
ctggtgaaaagacgtcgtgaatttgaagcaattgaaagatggtcttctccaagaactgat
atcattcaacaaaaggttggcagaaaattgaattttaatttaaaaattaattttaaacat
tccaggtctttcaactcactcgttcattgttctgatcgtcgatgcataccgaatcttc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ATCGGATTCGTAACTGGACTCCCAT 492 35 280 Antisense
GGACTCCCATCAGTATATGCTTTCG 33 525 295 Antisense
GCTTTACTGTCGTCCAACACTTAAG 81 305 372 Antisense
AATTCGACATCATTTTGGCACCAGA 118 177 476 Antisense
TTGGCACCAGATCTTCTAAACCGGC 234 707 490 Antisense
TCTGCACCAAGGACTCTCGTATGAT 243 609 546 Antisense
ATGATGGAATTTGTCTCTTCTCCTG 536 45 566 Antisense
TTGACCGCCTTCTTACAACTGGTGA 701 697 622 Antisense
TAAACATTCCAGGTCTTTCAACTCA 262 641 753 Antisense
TCAACTCACTCGTTCATTGTTCTGA 372 631 770 Antisense
GATCGTCGATGCATACCGAATCTTC 641 417 793 Antisense
Sequence Source Affymetrix Proprietary Database