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[187279_at]

Description C03B1.2 /REP_DB=WormBase Gene ID /WP=CE03904 /TR=SW:Q11109 /GB=AAA81744.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 108
1 2 3 4 range
A 32.6
(-2.2)
A 		19.3
(-3)
A 		27.9
(-2.5)
A 		114.3
(3)
A 		95
B 5.9
(-3)
A 		6.4
(-2.5)
A 		8.9
(0.2)
A 		11.6
(3)
A 		6
C 8.7
(-3)
A 		10.6
(-2.9)
A 		21.8
(-2.2)
A 		108.4
(3)
A 		100
avr 15.7
(-2.7) 		12.1
(-3) 		19.5
(-2.3) 		78.1
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 30.6
(2.6)
A 		11.8
(-2.7)
A 		32.2
(3)
A 		26.5
(1.4)
A 		10.7
(-3)
A 		16
(-1.5)
A 		22
B 9.7
(-3)
A 		19.9
(-1.9)
A 		64.3
(3)
A 		39.3
(0.3)
A 		18.3
(-2.1)
A 		35.9
(-0.1)
A 		55
C 7.5
(-3)
A 		59
(3)
A 		56.8
(2.7)
A 		10.1
(-2.7)
A 		26.9
(-0.7)
A 		27.1
(-0.7)
A 		52
avr 15.9
(-3) 		30.2
(-0.6) 		51.1
(3) 		25.3
(-1.4) 		18.6
(-2.5) 		26.3
(-1.2) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.9
(0.7)
A 		4.2
(-3)
A 		7.3
(-1.5)
A 		16.7
(3)
A 		13
B 1.9
(-1)
A 		1.6
(-3)
A 		2.1
(0.3)
A 		2.5
(3)
A 		1
C 2.9
(-3)
A 		3
(-3)
A 		7.6
(-1.2)
A 		18.3
(3)
A 		15
avr 5.6
(-1.3) 		2.9
(-3) 		5.7
(-1.3) 		12.5
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.6
(0.8)
A 		4.2
(-1.4)
A 		7
(3)
A 		6.7
(2.5)
A 		3.2
(-3)
A 		3.9
(-1.9)
A 		4
B 3.4
(-3)
A 		6.6
(-1.4)
A 		15.6
(3)
A 		10.4
(0.4)
A 		7.4
(-1)
A 		13.4
(1.9)
A 		12
C 2.8
(-2.7)
A 		18
(3)
A 		14.5
(1.7)
A 		2
(-3)
A 		8.7
(-0.5)
A 		9.1
(-0.3)
A 		16
avr 3.9
(-3) 		9.6
(1) 		12.4
(3) 		6.4
(-1.2) 		6.4
(-1.2) 		8.8
(0.5) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16087
Sequence Type Exemplar sequence
Representative Public ID C03B1.2 NCBI
Target Description C03B1.2 /REP_DB=WormBase Gene ID /WP=CE03904 /TR=SW:Q11109 /GB=AAA81744.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076669(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076669 NCBI Caenorhabditis elegans C03B1.2 (C03B1.2) mRNA, complete cds. 11/11 None
GENEFINDER00000009797 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6369990:6373113:1 11/11 None
C03B1.2 ENSEMBL cdna:known chromosome:CEL140:X:6367570:6373113:1 gene:C03B1.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009788 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6367569-6372514(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03B1.2
Entrez Gene 182145 Entrez gene
WormBase CE37604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81744 Hypothetical protein C03B1.2 [Caenorhabditis elegans] ref|NP_509070.2| C03B1.2 [Caenorhabditis elegans] 1.0E-162
blast AAA81744 Hypothetical protein C03B1.2 [Caenorhabditis elegans] ref|NP_509070.2| C03B1.2 [Caenorhabditis elegans] 1.0E-139
blast Q11109 Hypothetical protein C03B1.2 in chromosome X 1.0E-128
blast Q11109 Hypothetical protein C03B1.2 in chromosome X 1.0E-106
blast CAE61248 Hypothetical protein CBG05051 [Caenorhabditis briggsae] 2.0E-79
blast CAE61248 Hypothetical protein CBG05051 [Caenorhabditis briggsae] 3.0E-79
Sequence
Target Sequence 
>C. ELEGANS:187279_AT
gaatgtacaagcacgcatctgggaagaaaaacatacatatataaaatccggaaaagctgt
tttcaaagttccaaacccgccaaaacaagagagaactttccgttgggtaatcgaagctcc
ggcgagcagctgccagacatcacgtggatattctgtcaaattcacacccagtcgagtgaa
aagagcaaaaatcccggaacgaatgtacaatatgaaacgatgtttccaactccgccgaga
cagtcgtattgcattgtcagatgcaattttccagccggaaaagaagacaaacacgatgga
tcatttatttaccgcttctacagctccggaatactcggagaaggaattgcgacagataga
agattttcagtcattttttgacaattgggatgatgattactatacggagcaagaaaaata
tccagttatatatgacctcataacaattcaaatttcagattgtctagacctgatgcaaca
agctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTACAAGCACGCATCTGGGAA 250 331 174 Antisense
GAGAGAACTTTCCGTTGGGTAATCG 77 395 262 Antisense
GGTAATCGAAGCTCCGGCGAGCAGC 181 503 279 Antisense
CAGCTGCCAGACATCACGTGGATAT 572 203 300 Antisense
ATTCTGTCAAATTCACACCCAGTCG 178 11 323 Antisense
ATGAAACGATGTTTCCAACTCCGCC 559 43 385 Antisense
CAACTCCGCCGAGACAGTCGTATTG 596 187 400 Antisense
GTCAGATGCAATTTTCCAGCCGGAA 235 467 429 Antisense
GGATCATTTATTTACCGCTTCTACA 260 511 471 Antisense
GCTTCTACAGCTCCGGAATACTCGG 209 305 487 Antisense
GTCTAGACCTGATGCAACAAGCTGT 478 469 635 Antisense
Sequence Source Affymetrix Proprietary Database