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[187276_s_at]

Description T16H12.4 /REP_DB=WormBase Gene ID /WP=CE23988 /TR=SW:P34567 /GB=CAA83139.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 88      4grp_high_8_8 > 06      6grp_highest_nonorm > 91      6grp_total > 88      4grp_total > 01      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 79.4
(-2.6)
P 		71.7
(-3)
P 		74.6
(-2.8)
P 		174.5
(3)
P 		103
B 85
(-1.3)
P 		61.3
(-3)
M 		91.1
(-0.9)
P 		146.2
(3)
P 		85
C 87.6
(-2.9)
P 		86.7
(-3)
P 		101.8
(-1.7)
P 		155.9
(3)
P 		69
avr 84
(-2.2) 		73.2
(-3) 		89.2
(-1.9) 		158.9
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 343
1 2 3 4 5 6 range
A 146.7
(-1.6)
P 		114.5
(-2.4)
P 		91.5
(-3)
P 		153
(-1.5)
P 		212.9
(-0)
P 		335
(3)
P 		244
B 70.7
(-3)
P 		121.6
(-2.1)
P 		87.8
(-2.7)
P 		139.9
(-1.8)
P 		255
(0.2)
P 		413.6
(3)
P 		343
C 110.7
(-2.8)
P 		108.8
(-2.9)
P 		104.1
(-3)
P 		112.9
(-2.8)
P 		231.3
(0.2)
P 		345
(3)
P 		241
avr 109.4
(-2.7) 		115
(-2.5) 		94.5
(-3) 		135.3
(-2.1) 		233.1
(0.1) 		364.5
(3) 		270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 28.9
(3)
P 		15.6
(-3)
P 		19.5
(-1.2)
P 		25.5
(1.5)
P 		13
B 27.1
(1.5)
P 		15.1
(-3)
M 		21.1
(-0.8)
P 		31.2
(3)
P 		16
C 29
(-0.7)
P 		24.9
(-3)
P 		35.5
(3)
P 		26.3
(-2.2)
P 		11
avr 28.3
(3) 		18.5
(-3) 		25.4
(1.2) 		27.7
(2.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 27
(-2.3)
P 		40.7
(-1)
P 		19.9
(-3)
P 		38.8
(-1.2)
P 		64.2
(1.3)
P 		81.6
(3)
P 		62
B 24.6
(-2.9)
P 		40.5
(-2.1)
P 		21.3
(-3)
P 		37.1
(-2.3)
P 		103.6
(0.7)
P 		154.2
(3)
P 		133
C 41
(-1.8)
P 		33.2
(-2.3)
P 		26.5
(-2.8)
P 		22.7
(-3)
P 		74.8
(0.4)
P 		115.5
(3)
P 		93
avr 30.9
(-2.5) 		38.1
(-2) 		22.6
(-3) 		32.9
(-2.3) 		80.9
(0.7) 		117.1
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187276_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7799
Sequence Type Exemplar sequence
Representative Public ID T16H12.4 NCBI
Target Description T16H12.4 /REP_DB=WormBase Gene ID /WP=CE23988 /TR=SW:P34567 /GB=CAA83139.2 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027590 NCBI Caenorhabditis elegans T16H12.11 (T16H12.11) mRNA, complete cds. 11/11 None
SNAP00000013069 ENSEMBL cdna:SNAP chromosome:CEL140:III:10087294:10090667:-1 11/11 None
GENEFINDER00000013084 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10087294:10088434:-1 11/11 None
T16H12.11 ENSEMBL cdna:known chromosome:CEL140:III:10087185:10088434:-1 gene:T16H12.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10087289-10090663(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16H12.11
Entrez Gene 3564857 Entrez gene
SwissProt Q7YWU3 EMBL-EBI
WormBase CE35015 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83139 Hypothetical protein T16H12.4 [Caenorhabditis elegans] ref|NP_499239.1| T16H12.4 [Caenorhabditis elegans] sp|P34567|TF2H2_CAEEL Probable TFIIH basal transcription factor complex p44 subunit (General transcription factor IIH polypeptide 2) 0.0
blast CAE65046 Hypothetical protein CBG09887 [Caenorhabditis briggsae] 0.0
blast CAE17936 Hypothetical protein T16H12.11 [Caenorhabditis elegans] ref|NP_001022761.1| T16H12.11 [Caenorhabditis elegans] 1.0E-151
blast CAE65047 Hypothetical protein CBG09888 [Caenorhabditis briggsae] 3.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR007198 EMBL-EBI Ssl1-like 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187276_S_AT
gatgtcatggattgctttcgattcgaggatctccgtgacgttgctgcagttgttgagagt
catcgattgccggatgtgttggtttcatttgtcacgcagcagttgatggaatggagagaa
ttgttcaaagacgtcgagtggatgcgaaagtttcgtgaattgagccacaatatggattct
ttgaaaacgaaaagaattgagcatgtgctgcgacaagacatcatcagggagattggtgta
gccatcgatgtgcacaatctgaaaatcgatgatttcagaagtcacagcaataacacggaa
cgggtcgcggaaggaattgctcatgccattgaagagtccaagaataaacaagatgctggg
aatcagttgaagcatgttcctgtgttatccaagcagatgagtgttcgacgatggtatcga
gaacactatggtgacccgcaagctttgtcagatgaatcagatgaagaatccttgtctgat
ggtgacaattcgtctctttttgttggcacggcagattcaagcagtcgtgacgctagtgac
atatcgacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCATGGATTGCTTTCGATTCG 1 409 1351 Antisense
GATTCGAGGATCTCCGTGACGTTGC 657 431 1370 Antisense
GATTGCCGGATGTGTTGGTTTCATT 120 435 1415 Antisense
GTTTCATTTGTCACGCAGCAGTTGA 47 451 1432 Antisense
GGTGTAGCCATCGATGTGCACAATC 690 499 1585 Antisense
GCAATAACACGGAACGGGTCGCGGA 165 317 1637 Antisense
GGTCGCGGAAGGAATTGCTCATGCC 86 503 1653 Antisense
AGCATGTTCCTGTGTTATCCAAGCA 513 77 1721 Antisense
AACACTATGGTGACCCGCAAGCTTT 677 133 1772 Antisense
TTCGTCTCTTTTTGTTGGCACGGCA 478 689 1839 Antisense
GTGACGCTAGTGACATATCGACGGA 194 483 1877 Antisense
Sequence Source Affymetrix Proprietary Database