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[187275_at]

Description D1054.13 /REP_DB=WormBase Gene ID /WP=CE05531 /TR=SW:Q18953 /GB=CAA98446.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 88      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 91      6grp_total > 88      4grp_total > 31      6grp_highest_sub > In      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 206.8
(3)
P 		138.9
(-3)
P 		162.6
(-0.9)
P 		199.4
(2.3)
P 		68
B 209.1
(3)
P 		188.1
(0.2)
P 		194.1
(1)
P 		163.7
(-3)
P 		45
C 235.4
(3)
P 		166.1
(-3)
P 		186.9
(-1.2)
P 		199.1
(-0.1)
P 		69
avr 217.1
(3) 		164.4
(-3) 		181.2
(-1.1) 		187.4
(-0.4) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 228.9
(-0.7)
P 		243.8
(0.1)
P 		204.3
(-2)
P 		186.1
(-3)
P 		280.5
(2.1)
P 		297.2
(3)
P 		111
B 205.8
(-3)
P 		228
(-2)
P 		231.5
(-1.9)
P 		241
(-1.4)
P 		291.3
(0.8)
P 		341.7
(3)
P 		136
C 204.1
(-3)
P 		243.3
(-1.2)
P 		227.8
(-1.9)
P 		258.8
(-0.5)
P 		233.7
(-1.6)
P 		334
(3)
P 		130
avr 212.9
(-3) 		238.4
(-1.6) 		221.2
(-2.6) 		228.6
(-2.2) 		268.5
(-0) 		324.3
(3) 		111
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 75.3
(3)
P 		30.2
(-2.9)
P 		42.5
(-1.3)
P 		29.2
(-3)
P 		46
B 66.7
(3)
P 		46.5
(-0.8)
P 		45
(-1.1)
P 		34.9
(-3)
P 		32
C 77.9
(3)
P 		47.8
(-1.1)
P 		65.2
(1.3)
P 		33.6
(-3)
P 		44
avr 73.3
(3) 		41.5
(-1.7) 		50.9
(-0.3) 		32.6
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 42.2
(-3)
P 		86.7
(3)
P 		44.5
(-2.7)
P 		47.2
(-2.3)
P 		84.6
(2.7)
P 		72.4
(1.1)
P 		45
B 71.6
(-1.7)
P 		75.9
(-1.3)
P 		56.2
(-3)
P 		63.8
(-2.4)
P 		118.4
(2.2)
P 		127.4
(3)
P 		71
C 75.7
(-0.6)
P 		74.2
(-0.8)
P 		58
(-2.4)
P 		52
(-3)
P 		75.6
(-0.6)
P 		111.8
(3)
P 		60
avr 63.2
(-1.8) 		78.9
(0.1) 		52.9
(-3) 		54.3
(-2.8) 		92.9
(1.7) 		103.9
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13016
Sequence Type Exemplar sequence
Representative Public ID D1054.13 NCBI
Target Description D1054.13 /REP_DB=WormBase Gene ID /WP=CE05531 /TR=SW:Q18953 /GB=CAA98446.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073360 NCBI Caenorhabditis elegans D1054.13 (D1054.13) mRNA, complete cds. 11/11 None
SNAP00000017227 ENSEMBL cdna:SNAP chromosome:CEL140:V:10805036:10807060:-1 11/11 None
GENEFINDER00000017232 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10805036:10807060:-1 11/11 None
D1054.13 ENSEMBL cdna:known chromosome:CEL140:V:10805036:10806815:-1 gene:D1054.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10805035-10806772(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1054.13
Entrez Gene 179498 Entrez gene
SwissProt Q18953 EMBL-EBI
WormBase CE05531 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25213.1.S1_S_AT similar to UGA suppressor tRNA-associated protein (tRNA(Ser)Sec-associated antigenic protein) (SLA/LP autoantigen) (Soluble liver antigen) (SLA) (Liver-pancreas antigen) (LP) (SLA-p35) cfa
DROSOPHILA_2:1641718_AT dm
DROSGENOME1:149341_AT dm
CHICKEN:GGAAFFX.9134.1.S1_AT similar to SLA/LP autoantigen gga
HG-U133_PLUS_2:231730_AT soluble liver antigen/liver pancreas antigen hs
HG-U133B:231730_AT soluble liver antigen/liver pancreas antigen hs
HG-U133_PLUS_2:235516_AT soluble liver antigen/liver pancreas antigen hs
HG-U133B:235516_AT soluble liver antigen/liver pancreas antigen hs
U133_X3P:HS2.253305.1.S1_3P_S_AT soluble liver antigen/liver pancreas antigen hs
U133_X3P:HS.161436.0.S1_3P_S_AT soluble liver antigen/liver pancreas antigen hs
U133_X3P:HS.131209.0.A1_3P_AT soluble liver antigen/liver pancreas antigen hs
U133_X3P:1569634_3P_AT soluble liver antigen/liver pancreas antigen hs
HG-U133_PLUS_2:1553167_A_AT soluble liver antigen/liver pancreas antigen hs
HG-U133_PLUS_2:1569634_AT soluble liver antigen/liver pancreas antigen hs
HG-U95E:82131_AT soluble liver antigen/liver pancreas antigen hs
HG-U95D:84179_AT soluble liver antigen/liver pancreas antigen hs
HG-U95D:85619_AT soluble liver antigen/liver pancreas antigen hs
HU35KSUBC:RC_AA489061_AT Soluble liver antigen/liver pancreas antigen hs
U133_X3P:HS.48996.0.A1_3P_AT Soluble liver antigen/liver pancreas antigen hs
HG-U133_PLUS_2:227982_AT Soluble liver antigen/liver pancreas antigen hs
HG-U133B:227982_AT Soluble liver antigen/liver pancreas antigen hs
HG-U95B:45667_AT Soluble liver antigen/liver pancreas antigen hs
HG-U95C:62019_AT Soluble liver antigen/liver pancreas antigen hs
MOUSE430A_2:1435946_AT DNA segment, Chr 5, ERATO Doi 135, expressed mm
MOE430A:1435946_AT DNA segment, Chr 5, ERATO Doi 135, expressed mm
MOUSE430_2:1435946_AT DNA segment, Chr 5, ERATO Doi 135, expressed mm
MG-U74BV2:113733_AT DNA segment, Chr 5, ERATO Doi 135, expressed, mRNA (cDNA clone MGC:69960 IMAGE:6516578) mm
MU19KSUBB:TC31206_AT DNA segment, Chr 5, ERATO Doi 135, expressed, mRNA (cDNA clone MGC:69960 IMAGE:6516578) mm
MU19KSUBB:TC34310_AT DNA segment, Chr 5, ERATO Doi 135, expressed, mRNA (cDNA clone MGC:69960 IMAGE:6516578) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98446 Hypothetical protein D1054.13 [Caenorhabditis elegans] ref|NP_505761.1| D1054.13 [Caenorhabditis elegans] sp|Q18953|UGTAP_CAEEL UGA suppressor tRNA-associated protein homolog 0.0
blast Q61JN8 UGA suppressor tRNA-associated protein homolog emb|CAE64897.1| Hypothetical protein CBG09712 [Caenorhabditis briggsae] 0.0
blast CAB89517 SLA/LP autoantigen [Homo sapiens] 2.0E-98
blast CAB89517 SLA/LP autoantigen [Homo sapiens] 4.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR008829 EMBL-EBI Soluble liver antigenliver pancreas antigen 1.0E-126
Pfam IPR008829 EMBL-EBI Soluble liver antigenliver pancreas antigen 1.0E-126
Pfam IPR008829 EMBL-EBI Soluble liver antigenliver pancreas antigen 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187275_AT
ggaggagctgtaattgctgctttcaaacaaaatcatatacaatcaattgcacagtcatat
ccaggaagagcttcttctgttccttcaagagatctcgttctcactctactgtaccaagga
cagtcggcattcttagaaccttttggtaaacagaaacaaatgttcttgaaaatgcgccgg
aagcttatatctttcgcagaaaatattggtgaatgtgtatatgaggttccggaaaatgag
atcagctcggcaatgaccctgtccacgattcctccagcaaagcaaacattgttcggatct
attctctttgcaaaaggaatcaccggtgccagggtagtcacatccagccaatcaaaaacc
acgatagaaggatgcgaattcatcaattttggttctcatacaaccgaacaacatggtgga
tatttgaatattgcgtgctctgttggaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGAGCTGTAATTGCTGCTTTCA 30 517 862 Antisense
AGGAAGAGCTTCTTCTGTTCCTTCA 439 55 924 Antisense
GTTCTCACTCTACTGTACCAAGGAC 63 443 958 Antisense
GGACAGTCGGCATTCTTAGAACCTT 91 525 979 Antisense
GCGCCGGAAGCTTATATCTTTCGCA 694 287 1035 Antisense
ATGAGATCAGCTCGGCAATGACCCT 54 43 1097 Antisense
CACGATTCCTCCAGCAAAGCAAACA 630 199 1125 Antisense
ATTGTTCGGATCTATTCTCTTTGCA 281 5 1149 Antisense
GAATCACCGGTGCCAGGGTAGTCAC 116 325 1178 Antisense
GGTAGTCACATCCAGCCAATCAAAA 149 505 1194 Antisense
GAATATTGCGTGCTCTGTTGGAATG 621 325 1287 Antisense
Sequence Source Affymetrix Proprietary Database