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[187274_at]

Description C03C10.4 /REP_DB=WormBase Gene ID /WP=CE00875 /TR=SW:P42171 /GB=CAA84689.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 96      6grp_total > 78      4grp_total > 03      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3149
1 2 3 4 range
A 1121.2
(-2.4)
P 		1250
(-2.1)
P 		833.6
(-3)
P 		3697.1
(3)
P 		2864
B 1279.8
(-1.6)
P 		937.6
(-2.2)
P 		547.7
(-3)
P 		3623.4
(3)
P 		3076
C 1066.8
(-2.4)
P 		936.1
(-2.8)
P 		851.2
(-3)
P 		3086.1
(3)
P 		2235
avr 1155.9
(-2.1) 		1041.2
(-2.3) 		744.2
(-3) 		3468.9
(3) 		2725

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1028
1 2 3 4 5 6 range
A 662.5
(-2.2)
P 		776.9
(-1.4)
P 		547.7
(-3)
P 		856.6
(-0.8)
P 		998.9
(0.2)
P 		1389.3
(3)
P 		842
B 673.8
(-1.8)
P 		749.5
(-1.3)
P 		820.1
(-0.9)
P 		493.4
(-3)
P 		915.5
(-0.3)
P 		1417.4
(3)
P 		924
C 622.6
(-3)
P 		803.9
(-1.8)
P 		704.8
(-2.5)
P 		731.4
(-2.3)
P 		711.3
(-2.4)
P 		1521.2
(3)
P 		899
avr 653
(-3) 		776.8
(-2.1) 		690.9
(-2.7) 		693.8
(-2.7) 		875.2
(-1.3) 		1442.6
(3) 		790
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 645
1 2 3 4 range
A 408.2
(0.5)
P 		271.4
(-2)
P 		217.9
(-3)
P 		541.2
(3)
P 		323
B 408.1
(-0.4)
P 		231.6
(-2)
P 		126.9
(-3)
P 		772.1
(3)
P 		645
C 353.1
(-1)
P 		269.1
(-3)
P 		296.7
(-2.3)
P 		520.4
(3)
P 		251
avr 389.8
(-0.3) 		257.4
(-2.3) 		213.8
(-3) 		611.2
(3) 		397

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 409
1 2 3 4 5 6 range
A 122.1
(-2.9)
P 		276.3
(1.3)
P 		119.3
(-3)
P 		217.2
(-0.3)
P 		301.4
(2)
P 		338.2
(3)
P 		219
B 234.5
(-1.4)
P 		249.5
(-1.2)
P 		199.1
(-2)
P 		130.7
(-3)
P 		372
(0.6)
P 		528.5
(3)
P 		398
C 230.8
(-1.6)
P 		245.3
(-1.4)
P 		179.4
(-2.5)
P 		147.1
(-3)
P 		230.2
(-1.6)
P 		509.2
(3)
P 		362
avr 195.8
(-2.4) 		257
(-1.1) 		165.9
(-3) 		165
(-3) 		301.2
(-0.2) 		458.6
(3) 		294
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187274_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6898
Sequence Type Exemplar sequence
Representative Public ID C03C10.4 NCBI
Target Description C03C10.4 /REP_DB=WormBase Gene ID /WP=CE00875 /TR=SW:P42171 /GB=CAA84689.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065421(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065421 NCBI Caenorhabditis elegans C03C10.4 (C03C10.4) mRNA, complete cds. 11/11 None
SNAP00000025509 ENSEMBL cdna:SNAP chromosome:CEL140:III:4097099:4098099:-1 11/11 None
GENEFINDER00000025512 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4097099:4098099:-1 11/11 None
C03C10.4 ENSEMBL cdna:known chromosome:CEL140:III:4096872:4098099:-1 gene:C03C10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4097098-4098099(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03C10.4
Entrez Gene 175526 Entrez gene
SwissProt P42171 EMBL-EBI
WormBase CE00875 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84689 Hypothetical protein C03C10.4 [Caenorhabditis elegans] ref|NP_497822.1| C03C10.4 [Caenorhabditis elegans] sp|P42171|YKL4_CAEEL Hypothetical protein C03C10.4 in chromosome III 1.0E-121
blast CAE72900 Hypothetical protein CBG20214 [Caenorhabditis briggsae] 1.0E-99
blast AAC69046 Hypothetical protein K03E6.7 [Caenorhabditis elegans] ref|NP_508206.2| K03E6.7 [Caenorhabditis elegans] 3.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR007940 EMBL-EBI SH3-binding 5 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187274_AT
aaacacatatcaaaatcccgtcaatttttcgatttgaaaagccgcgaatcggaaatcaga
agatgtgttcaacaagcggcagctcaatttgaacgacaaaaaacttcagttgaaatggca
agagaacaagtgcaaatactgcataattcattgaataacaatcaagaattggatgcagag
aaacaatatgttgatgtgattgagcaacagttggaattggttaaagaagctgagggagaa
tgtttaaaagctgaaaagtgtcatgcatcacgtgtcagggatttgttacagttggaaatg
gctttaaggaaatgtttagaggaaaatggatctgccatcaaaaaatcccggccctattac
gaacgaaaagaagttctgacgcgaacaatgaattctcaacttgagttaatgtcaattttg
gagcatgaagtacaagaacgaaaagacagctacagtgattcgatgcgagctttagagcag
atcagcgatcaaattcatcaggagcgttcctcgcaaagcagtttggctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACACATATCAAAATCCCGTCAAT 476 127 187 Antisense
AGATGTGTTCAACAAGCGGCAGCTC 35 67 247 Antisense
AGCGGCAGCTCAATTTGAACGACAA 295 79 261 Antisense
AAGTGTCATGCATCACGTGTCAGGG 79 157 442 Antisense
GTGTCAGGGATTTGTTACAGTTGGA 585 477 458 Antisense
CTGCCATCAAAAAATCCCGGCCCTA 268 235 518 Antisense
GACGCGAACAATGAATTCTCAACTT 191 381 564 Antisense
GACAGCTACAGTGATTCGATGCGAG 88 369 631 Antisense
GATGCGAGCTTTAGAGCAGATCAGC 707 413 648 Antisense
AATTCATCAGGAGCGTTCCTCGCAA 705 175 678 Antisense
GTTCCTCGCAAAGCAGTTTGGCTCC 547 441 692 Antisense
Sequence Source Affymetrix Proprietary Database