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[187273_at] protease

Description F21F8.5 /REP_DB=WormBase Gene ID /WP=CE19404 /GB=AAK68340.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease
Cluster 6grp_total > 01      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 31.8
(-0.1)
A 		29.4
(-0.7)
A 		19.5
(-3)
A 		44.8
(3)
A 		25
B 54.4
(3)
A 		35.2
(-2)
A 		31.4
(-3)
A 		37.4
(-1.4)
A 		23
C 7.8
(-3)
A 		22.4
(3)
A 		20
(2)
A 		10.7
(-1.8)
A 		15
avr 31.3
(3) 		29
(1.2) 		23.6
(-3) 		31
(2.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 50.4
(3)
A 		4.9
(-3)
A 		26.3
(-0.2)
A 		15.5
(-1.6)
A 		36.1
(1.1)
A 		9.8
(-2.4)
A 		46
B 20.3
(-3)
A 		49.9
(3)
P 		29
(-1.2)
A 		40.1
(1)
A 		34.3
(-0.2)
A 		29.8
(-1.1)
A 		30
C 18.4
(-2.8)
A 		65.6
(3)
A 		34.5
(-0.8)
A 		24.2
(-2.1)
A 		16.8
(-3)
A 		58.7
(2.2)
P 		49
avr 29.7
(-1.6) 		40.1
(3) 		29.9
(-1.5) 		26.6
(-3) 		29.1
(-1.9) 		32.8
(-0.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 11.6
(3)
A 		6.4
(-1.8)
A 		5.1
(-3)
A 		6.6
(-1.6)
A 		7
B 17.3
(3)
A 		8.7
(-2.2)
A 		7.3
(-3)
A 		8
(-2.6)
A 		10
C 2.6
(-2.1)
A 		6.5
(2.4)
A 		7
(3)
A 		1.8
(-3)
A 		5
avr 10.5
(3) 		7.2
(-1) 		6.5
(-1.8) 		5.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.3
(1.9)
A 		1.8
(-3)
A 		5.7
(-0.4)
A 		3.9
(-1.6)
A 		10.9
(3)
A 		2.4
(-2.6)
A 		9
B 7.1
(-2.9)
A 		16.6
(3)
P 		7
(-3)
A 		10.6
(-0.8)
A 		13.9
(1.3)
A 		11.1
(-0.4)
A 		10
C 6.8
(-2.2)
A 		20
(3)
A 		8.8
(-1.5)
A 		4.9
(-3)
A 		5.4
(-2.8)
A 		19.6
(2.8)
P 		15
avr 7.7
(-1.9) 		12.8
(3) 		7.2
(-2.3) 		6.5
(-3) 		10.1
(0.4) 		11
(1.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11922
Sequence Type Exemplar sequence
Representative Public ID F21F8.5 NCBI
Target Description F21F8.5 /REP_DB=WormBase Gene ID /WP=CE19404 /GB=AAK68340.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=protease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072730(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072730 NCBI Caenorhabditis elegans F21F8.5 (protease) mRNA, complete cds. 11/11 None
SNAP00000008543 ENSEMBL cdna:SNAP chromosome:CEL140:V:8267841:8268289:-1 11/11 None
GENEFINDER00000008564 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8267841:8268289:-1 11/11 None
F21F8.5 ENSEMBL cdna:known chromosome:CEL140:V:8267841:8268289:-1 gene:F21F8.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8267841-8268290(-) 100.0 100.0
Public Domain and Genome References
Gene Title protease
Ensembl F21F8.5
Entrez Gene 184788 Entrez gene
SwissProt Q95Q58 EMBL-EBI
WormBase CE19404 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68340 Hypothetical protein F21F8.5 [Caenorhabditis elegans] ref|NP_505131.1| F21F8.5 [Caenorhabditis elegans] 1.0E-52
Sequence
Target Sequence 
>C. ELEGANS:187273_AT
acatttgtatttttgccacttgcatttttcgttctacttgaatcattcgaagcacaagag
ccgccaggaccgacggctagattaaatatgttggataattatatgaaacgcctcaatctt
actgatattcacttttctgatcccggtggtatagtgaaagtggacactgtcgtgaataaa
taccaacctctgaccgaagaggaaattattcgtaagatgaagaaaacggtaaatgacact
gcatacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATTTGTATTTTTGCCACTTGCAT 418 105 19 Antisense
CCACTTGCATTTTTCGTTCTACTTG 615 275 34 Antisense
GTTCTACTTGAATCATTCGAAGCAC 186 443 49 Antisense
TTCGAAGCACAAGAGCCGCCAGGAC 170 693 64 Antisense
GCCGCCAGGACCGACGGCTAGATTA 626 285 78 Antisense
GAAACGCCTCAATCTTACTGATATT 116 359 123 Antisense
TCACTTTTCTGATCCCGGTGGTATA 421 613 147 Antisense
GATCCCGGTGGTATAGTGAAAGTGG 351 415 157 Antisense
GACACTGTCGTGAATAAATACCAAC 249 367 181 Antisense
ATAAATACCAACCTCTGACCGAAGA 303 23 194 Antisense
AACGGTAAATGACACTGCATACGAT 10 143 243 Antisense
Sequence Source Affymetrix Proprietary Database