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[187272_s_at]

Description F44E2.7 /REP_DB=WormBase Gene ID /WP=CE24975 /TR=SW:P34437 /GB=AAA28038.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_high_8_8 > 09      6grp_highest_nonorm > 82      6grp_total > 58      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 328.1
(2.1)
P 		284.7
(0.3)
P 		208
(-3)
P 		349.5
(3)
P 		142
B 283.4
(2.5)
P 		200.7
(-0.8)
P 		146.7
(-3)
M 		295.8
(3)
P 		149
C 397
(3)
P 		229.4
(-3)
P 		245.3
(-2.4)
P 		321.5
(0.3)
P 		168
avr 336.2
(3) 		238.3
(-1.3) 		200
(-3) 		322.3
(2.4) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 425.4
(3)
P 		322.9
(-3)
P 		380.7
(0.4)
P 		343.6
(-1.8)
P 		332.7
(-2.4)
P 		416.7
(2.5)
P 		103
B 424.4
(0.8)
P 		358.3
(-1.8)
P 		441.1
(1.4)
P 		326.9
(-3)
P 		369.5
(-1.4)
P 		482.9
(3)
P 		156
C 367.9
(-0.6)
P 		384.8
(-0.2)
P 		275
(-3)
P 		377.9
(-0.4)
P 		328.6
(-1.6)
P 		510.8
(3)
P 		236
avr 405.9
(-0) 		355.3
(-2.4) 		365.6
(-2) 		349.5
(-2.7) 		343.6
(-3) 		470.1
(3) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 119.4
(3)
P 		61.8
(-2.1)
P 		54.4
(-2.7)
P 		51.2
(-3)
P 		68
B 90.4
(3)
P 		49.6
(-1.3)
P 		34
(-3)
M 		63
(0.1)
P 		56
C 131.4
(3)
P 		65.9
(-2.1)
P 		85.5
(-0.6)
P 		54.2
(-3)
P 		77
avr 113.7
(3) 		59.1
(-2.7) 		58
(-2.8) 		56.1
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 78.4
(-3)
P 		114.8
(3)
P 		82.9
(-2.3)
P 		87.2
(-1.5)
P 		100.4
(0.6)
P 		101.5
(0.8)
P 		36
B 147.7
(0.9)
P 		119.3
(-0.9)
P 		107.1
(-1.7)
P 		86.6
(-3)
P 		150.1
(1.1)
P 		180.1
(3)
P 		94
C 136.4
(0.9)
P 		117.4
(-0.2)
P 		70
(-3)
P 		76
(-2.6)
P 		106.3
(-0.8)
P 		171
(3)
P 		101
avr 120.8
(0.3) 		117.2
(0) 		86.7
(-2.7) 		83.3
(-3) 		118.9
(0.2) 		150.9
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187272_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7920
Sequence Type Exemplar sequence
Representative Public ID F44E2.7 NCBI
Target Description F44E2.7 /REP_DB=WormBase Gene ID /WP=CE24975 /TR=SW:P34437 /GB=AAA28038.2 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171218(11), NM_001027417(11), NM_171220(11), NM_171219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171218 NCBI Caenorhabditis elegans F44E2.7a (F44E2.7) mRNA, complete cds. 11/11 None
NM_001027417 NCBI Caenorhabditis elegans F44E2.7d (F44E2.7) mRNA, complete cds. 11/11 None
NM_171220 NCBI Caenorhabditis elegans F44E2.7b (F44E2.7) mRNA, complete cds. 11/11 None
NM_171219 NCBI Caenorhabditis elegans F44E2.7c (F44E2.7) mRNA, complete cds. 11/11 None
SNAP00000040002 ENSEMBL cdna:SNAP chromosome:CEL140:III:8846002:8847510:-1 11/11 None
GENEFINDER00000040007 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8846002:8848372:-1 11/11 None
F44E2.7a ENSEMBL cdna:known chromosome:CEL140:III:8845776:8848388:-1 gene:F44E2.7 11/11 None
F44E2.7d ENSEMBL cdna:known chromosome:CEL140:III:8846002:8848388:-1 gene:F44E2.7 11/11 None
F44E2.7c ENSEMBL cdna:known chromosome:CEL140:III:8846002:8847510:-1 gene:F44E2.7 11/11 None
F44E2.7b.1 ENSEMBL cdna:known chromosome:CEL140:III:8846002:8848294:-1 gene:F44E2.7 11/11 None
F44E2.7b.2 ENSEMBL cdna:known chromosome:CEL140:III:8846002:8847514:-1 gene:F44E2.7 11/11 None
F44E2.7b.3 ENSEMBL cdna:known chromosome:CEL140:III:8846002:8847705:-1 gene:F44E2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8845997-8848368(-) 100.0 100.0
Public Domain and Genome References
Ensembl F44E2.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28038 Hypothetical protein F44E2.7a [Caenorhabditis elegans] ref|NP_741256.1| F44E2.7a [Caenorhabditis elegans] sp|P34437|YL57_CAEEL Hypothetical zinc finger protein F44E2.7 in chromosome III 0.0
blast AAU87821 Hypothetical protein F44E2.7d [Caenorhabditis elegans] ref|NP_001022588.1| F44E2.7d [Caenorhabditis elegans] 0.0
blast S44819 F44E2.7 protein - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:187272_S_AT
tgaagatgctgatctggtccctgagctttccacacgaaaaccatacgataatacggagca
tgtttcaaagttatgcaaagtgtgcaaaaagggtcctcattatacatttgcaaatctgtt
cgagcattatcaagacctccataatgcaacaatcaaatcacttcactattatggatttaa
cggaaataagttaattggaaagaagaatctaattgaacgagatcactgtcagagatgcgt
tatcaagttcccaagagcacgagattactttgcgcatatgattaaacatcacgtttatga
aagtgtcagatgccagcttgatttcgaaaacgccaccaacgcggacgttgaagctagaat
gatgttccgtgacagaatcctgactcttggatacaacttcaaattcgagcaagtagctga
tccaaatctcgtatcagatgttttggaacctggacaagaaccatcgacaagtgcggagca
ggaagatccgagctcgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGATGCTGATCTGGTCCCTGAG 55 575 816 Antisense
AAGGGTCCTCATTATACATTTGCAA 451 159 904 Antisense
TCAAGACCTCCATAATGCAACAATC 4 633 945 Antisense
TGCAACAATCAAATCACTTCACTAT 464 577 960 Antisense
GATGCGTTATCAAGTTCCCAAGAGC 179 415 1049 Antisense
AGAGCACGAGATTACTTTGCGCATA 622 69 1069 Antisense
AACGCCACCAACGCGGACGTTGAAG 31 1 1144 Antisense
GTTCCGTGACAGAATCCTGACTCTT 503 441 1179 Antisense
TCCTGACTCTTGGATACAACTTCAA 508 593 1193 Antisense
GGAACCTGGACAAGAACCATCGACA 647 529 1260 Antisense
GGAGCAGGAAGATCCGAGCTCGCTC 622 517 1290 Antisense
Sequence Source Affymetrix Proprietary Database