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[187271_at]

Description Y57E12AL.6 /REP_DB=WormBase Gene ID /WP=CE22635 /TR=Q9N336 /GB=AAF59611.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 72      4grp_highest_8_8 > 11      4grp_high_8_8 > 55      6grp_highest_nonorm > 46      6grp_total > 73      4grp_total > 56      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2405
1 2 3 4 range
A 1988.5
(-3)
P 		2714.2
(-0.9)
P 		4056.8
(3)
P 		2156.2
(-2.5)
P 		2068
B 1678.8
(-3)
P 		3047.4
(0.4)
P 		4083.3
(3)
P 		2003.9
(-2.2)
P 		2405
C 2007.1
(-2.9)
P 		3339.9
(1.5)
P 		3800.6
(3)
P 		1976.4
(-3)
P 		1824
avr 1891.5
(-3) 		3033.8
(0.3) 		3980.2
(3) 		2045.5
(-2.6) 		2089

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1891
1 2 3 4 5 6 range
A 1512.3
(-3)
P 		2109.6
(-1.1)
P 		2743.1
(0.9)
P 		3403.6
(3)
P 		2553.6
(0.3)
P 		2537
(0.3)
P 		1891
B 2004.8
(-3)
P 		2222.7
(-2)
P 		3359.4
(3)
P 		3058.8
(1.7)
P 		2981.5
(1.3)
P 		2191.3
(-2.2)
P 		1355
C 2461.3
(-1)
P 		2068.8
(-3)
P 		3036.7
(2)
P 		2683.8
(0.2)
P 		3229.3
(3)
P 		2570.7
(-0.4)
P 		1161
avr 1992.8
(-3) 		2133.7
(-2.2) 		3046.4
(3) 		3048.7
(3) 		2921.5
(2.3) 		2433
(-0.5) 		1056
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1009
1 2 3 4 range
A 724
(0.3)
P 		589.2
(-0.8)
P 		1060.5
(3)
P 		315.6
(-3)
P 		745
B 535.4
(-1.7)
P 		752.6
(0.8)
P 		946.2
(3)
P 		427
(-3)
P 		519
C 664.4
(-1)
P 		960.2
(0.8)
P 		1324.6
(3)
P 		333.3
(-3)
P 		991
avr 641.3
(-0.7) 		767.3
(0.3) 		1110.4
(3) 		358.6
(-3) 		752

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 933
1 2 3 4 5 6 range
A 278.8
(-3)
P 		750.3
(1.8)
P 		597.4
(0.3)
P 		863.2
(3)
P 		770.6
(2)
P 		617.7
(0.5)
P 		584
B 697.6
(-3)
P 		739.8
(-2.5)
P 		815.8
(-1.6)
P 		810.2
(-1.7)
P 		1211.4
(3)
P 		817.1
(-1.6)
P 		514
C 912.3
(1.4)
P 		631.2
(-1.9)
P 		772.9
(-0.2)
P 		539.7
(-3)
P 		1044.9
(3)
P 		860.6
(0.8)
P 		505
avr 629.6
(-3) 		707.1
(-1.8) 		728.7
(-1.4) 		737.7
(-1.3) 		1009
(3) 		765.1
(-0.9) 		379
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11641
Sequence Type Exemplar sequence
Representative Public ID Y57E12AL.6 NCBI
Target Description Y57E12AL.6 /REP_DB=WormBase Gene ID /WP=CE22635 /TR=Q9N336 /GB=AAF59611.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072391(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072391 NCBI Caenorhabditis elegans Y57E12AL.6 (Y57E12AL.6) mRNA, complete cds. 11/11 None
SNAP00000039557 ENSEMBL cdna:SNAP chromosome:CEL140:V:7062415:7062951:-1 11/11 None
GENEFINDER00000039560 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7062415:7062951:-1 11/11 None
Y57E12AL.6.1 ENSEMBL cdna:known chromosome:CEL140:V:7062249:7062953:-1 gene:Y57E12AL.6 11/11 None
Y57E12AL.6.2 ENSEMBL cdna:known chromosome:CEL140:V:7062325:7063063:-1 gene:Y57E12AL.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7062415-7062952(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57E12AL.6
Entrez Gene 179092 Entrez gene
SwissProt Q9N336 EMBL-EBI
WormBase CE22635 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59611 Hypothetical protein Y57E12AL.6 [Caenorhabditis elegans] ref|NP_504792.1| Y57E12AL.6 [Caenorhabditis elegans] 3.0E-68
blast CAE71995 Hypothetical protein CBG19071 [Caenorhabditis briggsae] 3.0E-62
Sequence
Target Sequence 
>C. ELEGANS:187271_AT
atggctcttctgaaactcacaaaaactcgcgaagaagatttgctgcgcgacagctcatct
gagcagcaagagttcttcatgcaaagaccaaccgtcgagaagaagccaacggaggctcca
aaaatgccgaacaacgttgttgcccacgagttgcttgccgatggatcccgcatgaatcca
aagatcgagaactacttgaacgctcaacgtcttctctccggaaatgctcaagcagagcaa
cgcttgcttgagctcaactctgctgcacagattaatcgaggaccagacggtgtgttccag
tc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCTCTTCTGAAACTCACAAAAA 240 53 13 Antisense
AGATTTGCTGCGCGACAGCTCATCT 566 65 48 Antisense
GAGTTCTTCATGCAAAGACCAACCG 539 397 82 Antisense
AGACCAACCGTCGAGAAGAAGCCAA 633 51 97 Antisense
GAACAACGTTGTTGCCCACGAGTTG 31 353 141 Antisense
CCACGAGTTGCTTGCCGATGGATCC 153 273 156 Antisense
GCCGATGGATCCCGCATGAATCCAA 560 281 169 Antisense
CTACTTGAACGCTCAACGTCTTCTC 668 225 204 Antisense
AGCAACGCTTGCTTGAGCTCAACTC 275 77 248 Antisense
GAGCTCAACTCTGCTGCACAGATTA 33 389 262 Antisense
GAGGACCAGACGGTGTGTTCCAGTC 116 405 290 Antisense
Sequence Source Affymetrix Proprietary Database