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[187270_at]

Description C34C12.4 /REP_DB=WormBase Gene ID /WP=CE01512 /TR=SW:Q09269 /GB=CAA87095.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 39      4grp_total > 0      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 205.9
(1.4)
P 		96.5
(-3)
A 		209.6
(1.5)
A 		247.2
(3)
P 		151
B 126.9
(-3)
P 		158.2
(-0.1)
A 		190.7
(3)
A 		171.2
(1.2)
P 		64
C 123.9
(-3)
P 		139.8
(-2.2)
M 		145
(-1.9)
P 		238.3
(3)
P 		114
avr 152.2
(-1.6) 		131.5
(-3) 		181.8
(0.5) 		218.9
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 317.3
(1.1)
P 		189.3
(-3)
M 		193.1
(-2.9)
P 		218
(-2.1)
P 		376.6
(3)
P 		247.9
(-1.1)
P 		187
B 249.8
(-0.1)
P 		183
(-2.4)
M 		164.9
(-3)
P 		298.5
(1.6)
P 		338
(3)
P 		254.2
(0.1)
P 		173
C 276.9
(0.1)
M 		387.1
(2.5)
P 		136
(-3)
A 		135
(-3)
A 		400.9
(2.8)
M 		410
(3)
M 		275
avr 281.3
(0.4) 		253.1
(-0.4) 		164.7
(-3) 		217.2
(-1.5) 		371.8
(3) 		304
(1) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 75
(3)
P 		20.9
(-3)
A 		54.8
(0.8)
A 		36.2
(-1.3)
P 		54
B 40.5
(0.1)
P 		39.1
(-1)
A 		44.2
(3)
A 		36.5
(-3)
P 		8
C 41
(-2.5)
P 		40.2
(-3)
M 		50.5
(3)
P 		40.2
(-3)
P 		10
avr 52.2
(3) 		33.4
(-3) 		49.8
(2.2) 		37.6
(-1.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 58.5
(-1.6)
P 		67.3
(-0.9)
M 		42
(-3)
P 		55.3
(-1.9)
P 		113.6
(3)
P 		60.3
(-1.5)
P 		72
B 86.9
(-0.1)
P 		60.9
(-1.7)
M 		40
(-3)
P 		79.1
(-0.6)
P 		137.3
(3)
P 		94.8
(0.4)
P 		97
C 102.6
(1.1)
M 		118.1
(2)
P 		34.6
(-2.6)
A 		27.1
(-3)
A 		129.7
(2.6)
M 		137.2
(3)
M 		110
avr 82.7
(-0) 		82.1
(-0.1) 		38.9
(-3) 		53.8
(-2) 		126.9
(3) 		97.4
(1) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187270_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6436
Sequence Type Exemplar sequence
Representative Public ID C34C12.4 NCBI
Target Description C34C12.4 /REP_DB=WormBase Gene ID /WP=CE01512 /TR=SW:Q09269 /GB=CAA87095.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065314
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000028578 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3467870:3471641:-1 None
SNAP00000028572 ENSEMBL cdna:SNAP chromosome:CEL140:III:3467937:3469728:-1 None
NM_065314 NCBI Caenorhabditis elegans C34C12.4 (C34C12.4) mRNA, complete cds. None
C34C12.4.1 ENSEMBL cdna:known chromosome:CEL140:III:3467651:3469733:-1 gene:C34C12.4 None
C34C12.4.2 ENSEMBL cdna:known chromosome:CEL140:III:3467692:3469731:-1 gene:C34C12.4 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3468853-3469267(-) 92.75 100.0
Public Domain and Genome References
Gene Title
Ensembl C34C12.4
Entrez Gene 183200 Entrez gene
SwissProt Q09269 EMBL-EBI
WormBase CE31434 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T19696 hypothetical protein C34C12.4 - Caenorhabditis elegans 3.0E-47
blast CAA87095 Hypothetical protein C34C12.4 [Caenorhabditis elegans] ref|NP_497715.2| C34C12.4 [Caenorhabditis elegans] sp|Q09269|YQF4_CAEEL Hypothetical protein C34C12.4 in chromosome III 1.0E-41
blast CAA87095 Hypothetical protein C34C12.4 [Caenorhabditis elegans] ref|NP_497715.2| C34C12.4 [Caenorhabditis elegans] sp|Q09269|YQF4_CAEEL Hypothetical protein C34C12.4 in chromosome III 7.0E-39
blast CAE64959 Hypothetical protein CBG09793 [Caenorhabditis briggsae] 4.0E-32
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497715.2 1 47-64
C34C12.4.1 1 47-64
C34C12.4.2 1 47-64
GENEFINDER00000028578 1 177-194
SNAP00000028572 1 47-64
Sequence
Target Sequence 
>C. ELEGANS:187270_AT
caaaattttgcagctccgaaactcgcaagcggactgcacagatacgggttgcgacaatga
tggtttgagtcgtgaaggtggcaatacaatgatgatgtggacacttttatggacatttat
ggcaatggcactttacgtgatgagacccaattcaatgagatctgatagaagaaccgccga
tgatgcagcaattgaaaaaccaactggaagttctgatgttagtattgtcaagttcggatt
tatcacaagagcgcagaaaacccgctccacggccaattttgggtctcgccacgaaaaatt
aaaatttcgggtgtgcgcctttaaagtactacggtactttttgcacaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATTTTGCAGCTCCGAAACTCG 349 189 30 Antisense
CCGAAACTCGCAAGCGGACTGCACA 537 263 45 Antisense
GGACTGCACAGATACGGGTTGCGAC 448 523 60 Antisense
GATGGTTTGAGTCGTGAAGGTGGCA 664 407 88 Antisense
TTTATGGCAATGGCACTTTACGTGA 420 669 145 Antisense
GCACTTTACGTGATGAGACCCAATT 539 303 157 Antisense
TAGAAGAACCGCCGATGATGCAGCA 196 651 195 Antisense
AGTTCGGATTTATCACAAGAGCGCA 292 63 260 Antisense
CAAGAGCGCAGAAAACCCGCTCCAC 40 185 275 Antisense
TGTGCGCCTTTAAAGTACTACGGTA 678 505 341 Antisense
GTACTACGGTACTTTTTGCACAAGT 710 457 355 Antisense
Sequence Source Affymetrix Proprietary Database