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[187269_at]

Description W02B3.7 /REP_DB=WormBase Gene ID /WP=CE02079 /TR=SW:Q09343 /GB=AAA64326.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 3.3
(-3)
A 		4.3
(-2.8)
A 		11.2
(-1.4)
A 		33.6
(3)
A 		30
B 5.3
(-2.8)
A 		6.5
(-2.7)
A 		4.1
(-3)
A 		51.1
(3)
A 		47
C 1.3
(-3)
A 		7.5
(-2.6)
A 		1.2
(-3)
A 		108.4
(3)
P 		107
avr 3.3
(-3) 		6.1
(-2.7) 		5.5
(-2.8) 		64.4
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 16.1
(0.2)
A 		1.3
(-3)
A 		29.2
(3)
A 		5.3
(-2.1)
A 		17.9
(0.6)
A 		4.8
(-2.2)
A 		28
B 11.4
(3)
A 		4.7
(-1.9)
A 		4.6
(-2)
A 		6.6
(-0.5)
A 		4.2
(-2.3)
A 		3.2
(-3)
A 		8
C 21.4
(-1)
A 		58.3
(3)
A 		28.9
(-0.2)
A 		35.3
(0.5)
A 		3.2
(-3)
A 		18.9
(-1.3)
A 		55
avr 16.3
(0.6) 		21.4
(3) 		20.9
(2.8) 		15.7
(0.4) 		8.4
(-3) 		9
(-2.7) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.2
(-2.6)
A 		0.9
(-3)
A 		2.9
(0)
A 		4.9
(3)
A 		4
B 1.7
(-2.6)
A 		1.6
(-2.6)
A 		1
(-3)
A 		10.9
(3)
A 		10
C 0.4
(-3)
A 		2.1
(-2.4)
A 		0.4
(-3)
A 		18.3
(3)
P 		18
avr 1.1
(-3) 		1.5
(-2.8) 		1.4
(-2.8) 		11.4
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 3
(-0.5)
A 		0.5
(-3)
A 		6.4
(3)
A 		1.3
(-2.2)
A 		5.4
(2)
A 		1.2
(-2.3)
A 		6
B 4
(3)
A 		1.6
(-2)
A 		1.1
(-3)
A 		1.8
(-1.6)
A 		1.7
(-1.8)
A 		1.2
(-2.8)
A 		3
C 7.9
(-0.5)
A 		17.8
(3)
A 		7.4
(-0.7)
A 		7.1
(-0.8)
A 		1
(-3)
A 		6.3
(-1.1)
A 		17
avr 5
(0.5) 		6.6
(3) 		5
(0.5) 		3.4
(-1.9) 		2.7
(-3) 		2.9
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187269_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8195
Sequence Type Exemplar sequence
Representative Public ID W02B3.7 NCBI
Target Description W02B3.7 /REP_DB=WormBase Gene ID /WP=CE02079 /TR=SW:Q09343 /GB=AAA64326.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064838(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064838 NCBI Caenorhabditis elegans W02B3.7 (W02B3.7) mRNA, complete cds. 11/11 None
SNAP00000011595 ENSEMBL cdna:SNAP chromosome:CEL140:III:691170:691811:-1 11/11 None
W02B3.7 ENSEMBL cdna:known chromosome:CEL140:III:691170:691811:-1 gene:W02B3.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011601 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:691169-691811(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02B3.7
Entrez Gene 189107 Entrez gene
SwissProt Q09343 EMBL-EBI
WormBase CE02079 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA64326 Hypothetical protein W02B3.7 [Caenorhabditis elegans] ref|NP_497239.1| W02B3.7 [Caenorhabditis elegans] sp|Q09343|YR27_CAEEL Hypothetical protein W02B3.7 in chromosome III 3.0E-90
blast CAE69206 Hypothetical protein CBG15246 [Caenorhabditis briggsae] 9.0E-40
blast AAA64323 Hypothetical protein W02B3.4 [Caenorhabditis elegans] ref|NP_497236.2| W02B3.4 [Caenorhabditis elegans] sp|Q09341|YR24_CAEEL Hypothetical protein W02B3.4 in chromosome III 4.0E-20
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497239.1 1 7-29
W02B3.7 1 7-29
SNAP00000011595 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:187269_AT
gaggtacttcaactgccttttatactggtttctatcaatttttatcgtagtagtgtacta
caatgagattttgacaacgccgataattgaaccttcggttgagtacgtactctgctcgac
tcttttagactacctaaaagctcccattccagttctcctaattgattttgagatacttga
acaaatcgaaagaaattcgtgtcatatgcaaacagagaaacgggtcaagatcggtgtaga
caaaacccaagaaaacgctcatcttctgcagaaagattcccgcttccacgtggtaaacta
taaaaattccacgaaaactgatcatttggattttgaagttacgacatttacgaagaaatc
tattcctaaacgctttggagctagaatagttggaaatgttcaagttcccttagatattca
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTACTTCAACTGCCTTTTATAC 630 399 15 Antisense
ACTGCCTTTTATACTGGTTTCTATC 221 99 26 Antisense
GACAACGCCGATAATTGAACCTTCG 319 365 87 Antisense
GAACCTTCGGTTGAGTACGTACTCT 307 289 103 Antisense
TACTCTGCTCGACTCTTTTAGACTA 621 643 122 Antisense
TTAGACTACCTAAAAGCTCCCATTC 92 683 139 Antisense
GAGAAACGGGTCAAGATCGGTGTAG 599 391 229 Antisense
GAAAACGCTCATCTTCTGCAGAAAG 224 355 265 Antisense
TCTTCTGCAGAAAGATTCCCGCTTC 543 617 276 Antisense
AGAAATCTATTCCTAAACGCTTTGG 465 71 368 Antisense
GTTCAAGTTCCCTTAGATATTCAAC 583 445 412 Antisense
Sequence Source Affymetrix Proprietary Database