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[187268_at]

Description F22B7.3 /REP_DB=WormBase Gene ID /WP=CE00156 /TR=SW:P34406 /GB=AAA65463.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 1.1
(-3)
A 		23.3
(-0.1)
A 		3.5
(-2.7)
A 		46.8
(3)
A 		46
B 23.9
(-0.4)
A 		12.4
(-3)
A 		38.6
(3)
A 		25
(-0.1)
A 		26
C 1.4
(-3)
A 		21
(-0.9)
A 		2.3
(-2.9)
A 		58.3
(3)
P 		57
avr 8.8
(-3) 		18.9
(-1.2) 		14.8
(-2) 		43.4
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.4
(-2.6)
A 		0.9
(-3)
A 		35.3
(3)
A 		13.9
(-0.7)
A 		17.8
(-0.1)
A 		2.5
(-2.7)
A 		34
B 27.8
(3)
A 		6.7
(-1.7)
A 		18.7
(1)
A 		3.7
(-2.4)
A 		13.5
(-0.2)
A 		1
(-3)
A 		27
C 16
(-0.4)
A 		36.3
(3)
A 		8.5
(-1.7)
A 		21.4
(0.5)
A 		3.8
(-2.5)
A 		0.6
(-3)
A 		36
avr 15.7
(1.4) 		14.6
(1.1) 		20.8
(3) 		13
(0.6) 		11.7
(0.2) 		1.4
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.4
(-3)
A 		5.1
(1.3)
A 		0.9
(-2.5)
A 		6.9
(3)
A 		7
B 7.6
(1.7)
A 		3.1
(-3)
A 		8.9
(3)
A 		5.3
(-0.7)
A 		6
C 0.5
(-3)
A 		6
(0.5)
A 		0.8
(-2.8)
A 		9.8
(3)
P 		9
avr 2.8
(-3) 		4.7
(-0.5) 		3.5
(-2.1) 		7.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.6
(-2.8)
A 		0.3
(-3)
A 		7.7
(3)
A 		3.5
(-0.4)
A 		5.4
(1.1)
A 		0.6
(-2.8)
A 		7
B 9.7
(3)
A 		2.2
(-1.8)
A 		4.5
(-0.4)
A 		1
(-2.6)
A 		5.5
(0.3)
A 		0.4
(-3)
A 		9
C 5.9
(0.1)
A 		11.1
(3)
A 		2.2
(-1.9)
A 		4.3
(-0.7)
A 		1.2
(-2.4)
A 		0.2
(-3)
A 		11
avr 5.4
(3) 		4.5
(1.9) 		4.8
(2.3) 		2.9
(0) 		4
(1.3) 		0.4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187268_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6536
Sequence Type Exemplar sequence
Representative Public ID F22B7.3 NCBI
Target Description F22B7.3 /REP_DB=WormBase Gene ID /WP=CE00156 /TR=SW:P34406 /GB=AAA65463.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066505(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066505 NCBI Caenorhabditis elegans F22B7.3 (F22B7.3) mRNA, complete cds. 11/11 None
SNAP00000003835 ENSEMBL cdna:SNAP chromosome:CEL140:III:8648966:8649359:1 9/11 None
GENEFINDER00000003843 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8648966:8651987:1 11/11 None
F22B7.3 ENSEMBL cdna:known chromosome:CEL140:III:8648966:8649359:1 gene:F22B7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8648960-8649354(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F22B7.3
Entrez Gene 184813 Entrez gene
SwissProt P34406 EMBL-EBI
WormBase CE00156 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA65463 Hypothetical protein F22B7.3 [Caenorhabditis elegans] ref|NP_498906.1| F22B7.3 [Caenorhabditis elegans] sp|P34406|YLW3_CAEEL Hypothetical protein F22B7.3 in chromosome III 8.0E-55
blast AAA65463 Hypothetical protein F22B7.3 [Caenorhabditis elegans] ref|NP_498906.1| F22B7.3 [Caenorhabditis elegans] sp|P34406|YLW3_CAEEL Hypothetical protein F22B7.3 in chromosome III 1.0E-52
blast AAA65463 Hypothetical protein F22B7.3 [Caenorhabditis elegans] ref|NP_498906.1| F22B7.3 [Caenorhabditis elegans] sp|P34406|YLW3_CAEEL Hypothetical protein F22B7.3 in chromosome III 2.0E-50
blast CAE75023 Hypothetical protein CBG22928 [Caenorhabditis briggsae] 6.0E-26
blast AAA65464 Hypothetical protein F22B7.2 [Caenorhabditis elegans] ref|NP_498907.1| F22B7.2 [Caenorhabditis elegans] sp|P34405|YLW2_CAEEL Hypothetical protein F22B7.2 in chromosome III 4.0E-25
blast CAE75023 Hypothetical protein CBG22928 [Caenorhabditis briggsae] 2.0E-24
blast CAE75023 Hypothetical protein CBG22928 [Caenorhabditis briggsae] 7.0E-22
blast CAE75024 Hypothetical protein CBG22930 [Caenorhabditis briggsae] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:187268_AT
ggcacacaataattacctggatcttgaaatgttgttcaatgaatgtaatgctcaacatta
cgaaaatttaggaatgttcttcaaatggcttcaacaatttgctgctcatcacgaagatcc
aaagatcacaattaaagatttcaagggagataaaacatcaggagaaatgattcttcatgt
taataccttcactttattcaagtacagacaagaatttgacatgaaagttagcgctttgaa
tgacaatggacttgggtggaagattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACACAATAATTACCTGGATCTT 599 535 15 Antisense
TTACCTGGATCTTGAAATGTTGTTC 109 683 27 Antisense
AATGTTCTTCAAATGGCTTCAACAA 557 163 87 Antisense
AATGGCTTCAACAATTTGCTGCTCA 667 161 98 Antisense
CAATTTGCTGCTCATCACGAAGATC 71 181 109 Antisense
GCTGCTCATCACGAAGATCCAAAGA 259 297 115 Antisense
GATTCTTCATGTTAATACCTTCACT 210 431 183 Antisense
ATACCTTCACTTTATTCAAGTACAG 250 23 197 Antisense
GAATTTGACATGAAAGTTAGCGCTT 587 325 226 Antisense
GTTAGCGCTTTGAATGACAATGGAC 622 445 241 Antisense
GACAATGGACTTGGGTGGAAGATTT 183 363 256 Antisense
Sequence Source Affymetrix Proprietary Database